GgaINT0015086 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7623255-7628045:-
Coord C1 exon
chr14:7627873-7628045
Coord A exon
chr14:7623924-7627872
Coord C2 exon
chr14:7623255-7623923
Length
3949 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TTTTTATTTTGTTACTGCAGGAG
3' ss Score
8.36
Exon sequences
Seq C1 exon
GCCGAGAAGGGCAACCTACGGCTCAAGCAACTGAAAAGGCAGCTGGAGGAGGCTGAGGAAGAGTCTCAGCGTATCAACGCAAACCGCAGGAAGCTGCAGAGAGAGCTAGATGAAGCTACTGAGAGCAACGATGCCCTGGGACGGGAGGTTGCAGCACTGAAGAGCAAGCTAAG
Seq A exon
GTAGAGTGCCTTTGTTTGAGAAAAATTGAAATTTAGTATCAAACTAAAGAAGTAAAAAATAAAATAGTTTAGTCAAGTAACAATCAGACACCGATAACGAATGCAAGGTGTAACTTTGCAGTATGAGCTTGGCAAATGCAACAATAGGCCAAAGTCAGAAGGTGAAGTGCATATCATGGACTGCAGTAGTCTCAGGATCTTAGCTGTGAGAGTAACAACTGTGACAACGTGGCATAGGCCTTACTACTTTTCTATCTGAAGCTTCTGATGGCTTAACTAGGAACAGAATTAGGCTTGGTTGCTTTTGAAAATACTCCTATGGCTGTATGTATTTATTTCTACAGTTACAAATGGGTAGAAATGGTCATGCTTTTCATACTTACGCACATGCACAATTCACATGTAATGACTGTGATAAGTCTTGCACATCTCCATAGGCAGCAAAAGGCAAAGAACATTATACAACTCTCATTCAAAAGTTTCTGGACCTCACCTTTCCTTATATAGGGTCATTAGAGCAAGGAAAGACCAAAATATTCTTTTGCACTTTCCTTATGAAAACTGGCTGGGAAAAAGATAAAAGGTGTGATCAGTCAGATACATACCCGAGTTTTCCTGCACTTGTTGGGTCTGAAAACACTAATCACTGAAACACAGGCTGACTTGATTTATAGGAAATTTCTGTATCTGCTTCATCAAACTGTTGAACTCTGCTTTCTACCTAAAAACAAAAAGCAATTCAAATGAAACTAAAGCACCTGCCTAGTTGTGTTCTTGCTGCTGTAGTTGAATTTTGCCATTGACATGCATGCACCTTCAGATGTAGATACTTAATTCAAAGCCAAGAGTTAGGGATGTGGCAGCCTTTTCTATTAGCACCACCTCGGTTGGTACACACTACTGGCTGCATTACAAAATAGCTCTGCATCCAGCCCTTTTTACATAGAAAAGGATATTTACATTGAATAGCAGATTATTTTTGTTTGACCTGAATGTACTGTAATTGGCGGTAATGTACTTTGTTTAATTATTTAAAAGTAATATACCTACCTCTGATCATGACTATGTGCTTAGTATAACTGCCCGGGATTCTTTATCTCTGTTTCAGAGGGACACAGGAACCTTCGCATGACTAAGCAGGTACCATGCCTTCAACTTTGCAGCTAGCTTGTGTTGTACAAATTCCATTTTCTTTGGCCCAAGTAAAAATTATGTGAGGTTTCTGCAAACTGTGAAGGCTTGGATATCTTGGCATTAAATTTTTTTTTTTAAAGAGAGACAAATATTACAATAATCTAGCTACTATCAGCTGTTCAGTGATACAACTTTCTTACAAGTAGGCTATGTACTGACGTAGACTTACCAGTGTTGCATTCTCACTTCTTATAAGCTCTACCAACTGAGTACCCAATAAAGTACTCTGACATTTTCTGCATGTCAATTGTCTTTTTTTTTTTTTTGCACCTATTTACAGCCAAAGATGAAAAATTTGCAAATACACCAATCAAAAACACCATTAATTAGTAAAATTGATTAAAAGCACTAATGAACATGAAGTGTCACAGCATGTTAAGTGTTTCACATTATTTCTTAAGCATATTGCAATGTTGACTCTAAGGTAAGACCCTACCTAATTCACGAGATTTTAGAATACCTTGTTTGCATGTGGTTTATTACACAATTTTGCCATCCAATCATGAATAAAAGGAAATTGTGCTTTTTGTTACATAGCACTCTGTGCCTGTGGTTGCTTACAAATAGCTATTACTAAAGCTTTTAAAACTATTTTGCAGACATTACCTTGCTTGTGTACAGTGTGTTGCTTGTCTACTGCTACTGAAACGTAAAGCACAGACACAGAAATTAACATGAACACTGTAATACAGCACAGCATTACATTACACTTCATCACGTTCTCTAGAAGTAGGAATAACATGTGCTGTTGCAAAAATTAAAGAGCTACTGCCTTGTAATATTTGTATATCTTCTATTTTATATATGCTGAATTTCGCTGTGAATACACAAATATTTAAAGAAGCTGTCTTGTCCTTGCATGTGCCTTTTAGTCAGCCTAATTTTCCCAGAGCGTGATTCAAGCATCACTCCAGTAGCACTTGTTCAAAGGTAGACTAAATAGACGCTAAGCAAAACACTAATGCTTAGGGCTTGCCTCAGCTGTATGCGTTACTCTAAAGGTACTGATGCAGATGATCACAAGAAGATTATCAAAGCCATAAACCTGTTTTAGATTAACAGATTTAAAAACTATTTATAAACAGGACCAATACCAATTTGAAGGAAGTTCACTTTTTTTGTAGCCAAACTGTACTCCAAGACTTGGTTACACTCTGTTACTCTCCACCAGTAACGTTCTTTTTTAGTACCTCAGCAAACTACAAGAGTGTAAAAAGTCATTTGACAAATGCTTTGTATTTAAGTCTAGCTAACAAGAGCCCAAGGAGGGGAGGGAGCTAAAGAGCTCCTCCTGGTGAAGACTGAGATCTTCATTGACAAGATCTAACAAATTTATTGACCTAACTAGAGCTTAGTAACAAATATCTGCCATCATAAAGTAGTAGATGCTGCTGGTTTACTCTGTCAAGCACAACAGAGTAGAAACATACCCTTATCTTAGAGTCTTCTAATACACATCTCAGAAGAACTAAGGCTAAGAGTAGATCTTAAGCATTATTATCCAGCTAGTTGTTTGCTCACATCAAAATTAAGTTACCATAAAGGGTTGGAAAAACAAAACAAAAACTACACATGTACACAATGTGTACACATGTGAACACATGTACACATGTGTTCTACCTTGGAAACACAGGTTTGTACTCTAAAATAAATTAGGCCAGCCAACATTCTTATCTACTTCCTAATATGGAACACTGAACTTTGAACGTGAATAGCTGCTGCAGAAAGGACAACTCTGGCTTAGTCTTTTGCAAGGACAAGACAAGCCTTTAAATATTTACACATGATTGCTGTACCCAAAAGCGCAGAGTTGGATATATTTTAATACCAAATTAGTAATTCTGGCATAACATTCAGTGATCATGAATTTATTTTGTTGCTTATGTCTGTGGTCTCAAGCCTTTACAAAGGTTTGCTTAATTAGGAGCAAGTGAGAGGCCATGTTACAAAACTCCAATGTTTTGTAGCACACAAGCACTGAAGGCCAAGATGAGATATACTCATCTTCTGTCTCACTTGCTCACACCTCCAAAAAAATATTAACCTTGAGGACCAAAGTGTCCCTGGCTTGGGCTGTAGCTATGAAATCTATGGGGATGGGAGGGAAAAGGGAAAAGAAAAGGGGGTAATATGGGAAAAAAAAAAAATTGCAAGATTTTCTATAAGACATTGTCTCTGCTGAGTGTCAGCATATGAATTATGACAGTTCCAAAACACAGTGATGGCTTCCTCTCCCCACTGTGGAAAAGACTGGAGCTACTCACAGCCTAGAATGCCACGTCACAGCACCTGTGGTACTCTGACCAACACAGCCTGACTGTGGGATCAGAAAACACCCACTGATCTTTGAGAAAGGCAGGATCAGTGCTCCACTGATGATGTGGGGATAAGCAATTCCCTTTTCCCAATCCCTTCTAAGCACACTCAGTTGTAGTCTCATAGGGAAAAAAAAACAAAAAAACAGAAAAAATGAAAGAAAGAACAGGGCATTTGGATCAGATGAAACAATTTAGAATAGACTTCAAGGACAAGAACAGGAATCCCATCACAGTTCCAAGCAAGTGGAAGTCTCAACCTGTCCACATGTTAGCTTTAGATGCTACAGAGAAGACAACTATATTAGGTGCCCACAGCTCTTGGCTGTTTCGCTTTTAAAAACCTCAGGCCCACGGGTACTGTTACAAAACTCTATGCTTGTTTGTGAGGGCTGTAAATGACCTAACATCTGATTTTATTTTTTATTTTGTTACTGCAG
Seq C2 exon
GAGGGGAAATGAACCAGTATCTTTTGCCCCACCACGCAGATCTGGAGGCAGAAGAGTAATTGAGAATGCAACAGATGGAGGTGAAGAAGAAATTGATGGAAGAGATGGAGATTTCAATGGAAAAGCCAGTGAATAAACACGCTTAAAATTGCACTGCAGCAAGGGGAGGGAGGATGATATTTAGCACTGTTTAAGTCTACTCTTAGTGTCAAGGTCACACACACCCACTCCTCTGATGATGATGAAAGCACAACTGCCTTGTCTCCAATGTATAGGTTCATGATAAAAGTACTCCAGAACTTTCTTCATGAAATGTTTTTTGAAAAGTTTTGTTATAAATTCAGAGTAATTCACGAAGAATCTTCCAGAAAGTGAGTTCCAGTAGTTCAATTTAAATCTCAGTGAACTGAAGTTTACAAAGGATTTGTAGGACTGTTGCAGGAAAAAAAAAGGCATTGGTCAGTTAATCTTTTCTTAAACTTTCATTTTGTCTTAAGTATTCAATATAGTATTTTTTTTTCCTGCTTACTACACCCCTGATGCACCATTCACAAGGTGGAAGTGCCTTTTTAATCACATACTGAAAAATAAAATATCATTTGTTCAAATTAAATCAACTGTTACAGTTTTATATGCACCATGGATGTGCTTACACACTAATAAAAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
PF0157614=Myosin_tail_1=FE(6.6=100)
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]