GgaINT0019503 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2919433-2919824:+
Coord C1 exon
chr12:2919433-2919492
Coord A exon
chr12:2919493-2919590
Coord C2 exon
chr12:2919591-2919824
Length
98 bp
Sequences
Splice sites
5' ss Seq
GATGTAGCT
5' ss Score
0.35
3' ss Seq
AAGCTGGGGACAGAAGTTAGGAT
3' ss Score
-16.01
Exon sequences
Seq C1 exon
CTTATGGCAATGCTAGGTTGGAGCTGCCTGGCCAGATCTCAGCATCACATTAGGGCTGAT
Seq A exon
GTAGCTAATCTTCCCTCTGCCACAGCTTCCTTAGATAGTTACAGGGACAAATGAGAGCAACCCAGGACGAAGTGCTCAAAGCTGGGGACAGAAGTTAG
Seq C2 exon
GATAGGTGGTGCACCTCTGGCTCATACAGTCACCTACAGCATTACCCAGAGAGCAGCAGGTCTCAGACACAGCAGCTCTCACATGTGCATCTTATTCCACAGCTCATAAACAGCCTGGCTGATGAGAAGGTGCGCTGGCAGGACACCGTTGAGAACCTGGATTACAAGATCAACAACATTGCTGGGGACGTGCTGCTTGCAGCTGGCTTTGTTGCCTACCTGGGCCCTTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF127772=MT=PD(4.6=70.0)
A:
NA
C2:
PF127772=MT=PU(78.7=75.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAATGCTAGGTTGGAGC
R:
GCCAGGCTGTTTATGAGCTGT
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]