GgaINT0019522 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2929353-2929964:+
Coord C1 exon
chr12:2929353-2929497
Coord A exon
chr12:2929498-2929757
Coord C2 exon
chr12:2929758-2929964
Length
260 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CCTCTCCGTGTGCCCCACAGGCC
3' ss Score
11.36
Exon sequences
Seq C1 exon
GTACAACAGTCTCCTGGAGGTGATTGCTCAGACACTGAAGGATCTGCTGAAAGCTCTCAAGGGCCTGGTTGTGATGTCCTCTCAGCTGGAGCTGATGGCCAACAGCTTGTACAACAACTCCGTCCCCACTGTGTGGAACACCAAG
Seq A exon
GTAACACTTCCCAACCAGCCCCGCTGCCCCCAGGAGTTCTTCTCACCCCAGGGAGAGTCATCAAACCCCACAGCTGGGCTGGGCTGTCTCACATGGAACAGGCTCCTGCGGTTTGCACATGTCTCCTGCCTCGTGCAAGGGCTTCTCAGCCCTAAGCTGAAGGAGTCCCTGGGCTATGGGCAGCTCTCAGCAACTCGGACACAAGGTTTAGGGTTTCCCCTTGTATGCATTCAACGCCTTCCTCTCCGTGTGCCCCACAG
Seq C2 exon
GCCTACCCATCACTGAAGCCCTTGGCATCCTGGGTGAATGACTTGGTGCAGCGGGTTGAATTCCTCCAGAAGTGGATCGGCCACGGGATCCCCTCTGTGTTCTGGATCAGTGGGTTCTTCTTCCCTCAGGCCTTTCTCACTGGCACGCTGCAGAACTTCGCTAGGAAGTCTGTCATCTCCATTGACAACATCTCATTTAGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:76
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTGGAGGTGATTGCT
R:
TTCCTAGCGAAGTTCTGCAGC
Band lengths:
305-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]