GgaINT0020584 @ galGal4
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr12:610484-611720:+
Coord C1 exon
chr12:610484-610585
Coord A exon
chr12:610586-611633
Coord C2 exon
chr12:611634-611720
Length
1048 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGATTCTGCTTTTGTCTCAGAAA
3' ss Score
6.33
Exon sequences
Seq C1 exon
GAACTAACGCCATTCCCAAAAGAATGTGTCTACATCCATGATCCACAAGGACTGAATGTCCTGAAGAGGGGGTGTGCCCGGTACTGCAATCAGACCATCGTG
Seq A exon
GTGAGTGTGATGGAAGGCCATATCCATTTGAAAGGAGCTTAGCTTAGCTTTGCCTGATCCATGGAGAAGATGTCCAACTCCTTGAGTTGAGCGAGGGTGGGATGGGAGCCAAGGGAAGGCTGTCCCATGCAAAGGTCTGTCCCCAGGCCCAGCAGACAGGCTGGCTGCCCACCCTCCTTCAGTAGATGAGGAGCAGAACACAGCACTAGCCTGCTATGAACATCAGAAAACAGCTCAGTTCAGCTCGAGTACGTTAAATAAATATGACAAAGCACACCAGTTTCAACCAGCCGAGCCAGAGGGAGCCACGGGACAAACGATGCGGTGTTCTCCGAGTGCCCTGTTTTAACCATGTCTCCCAGAGGAAGTAGAGCACGGTGAAAGTGCCGTAAGCTGTGAAGTGATTGCATCCTGTTTACGAAGCACTGTCAGATGGGTCAGAAAAGTGGCTCTTGTAGAGTTTACAGACCTCACATTTGACTGCAGCTCTTGAACTGTCCCAGTGCCAAGTATACAGAATGATTTGCGGGTGTCTCATTAAACAGCGGACGGATGTTTGTCTTGTGATTCCTCTTTTGCTGGTCACTGTGACAAGGTTTGCAATTCAGGACTGCTACCTCCCTCCAAAAAAGTACTGAGTGATGATAAACAAGGAGCAAGTGGGACAATATTATTAGTGAAATAAAGAGAAATGTGGACATAAAAAAGTCATAAAAAATAGAACAAAACCGAACAGAAAGTAGTGGTTTATGTTGAAAAGAATTGGCTGCAATCAGAAAGAGAGGTGTCTTTGGAAAACATTTTCAGAATTAAAGCTAAATTTTATATTTGGACATGATGATCTTAAAGGTCTTTTTCGACCTAAATGATTGTATGGTTTTAACTATGGGTGTTCTTAGAAACGCAGATAACAAGTGAAGCAGTCTATTTCAGTATAGCCCGTGATCACAGGAAGGAGGACCTGGATTTCAGAACTGTGAGAGCAGAACAGCTCCAGGCAATACATTCTATGTTGCTTGATGCTTTAAGGATTCTGCTTTTGTCTCAG
Seq C2 exon
AAACCTGGGTGCTGTGAAGGATTCTTTGGTCCAGACTGCACGCCGTGCCCAGGGGGATATACCAACCCATGCTATGGCCGGGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAACGCCATTCCCAAAAGA
R:
ATTTCCCCGGCCATAGCATG
Band lengths:
187-1235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]