GgaINT0020592 @ galGal3
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:617623-618067:+
Coord C1 exon
chr12:617623-617670
Coord A exon
chr12:617671-618053
Coord C2 exon
chr12:618054-618067
Length
383 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AGCTGCAGAATTCCCCTTGGCAA
3' ss Score
-8.77
Exon sequences
Seq C1 exon
GAGCTGGCCGGGAGTTCCCACTTTGCAGGCTTCTATGGTTGGGTTAAG
Seq A exon
GTAAGAACGGCCATGGGATGCCCACGTGGGTAAGTTCTGTAGAAGTGAAGTCACTGTGAACACTGTTGTTATAGGAAGAGCAACTCCAGTCTTCCTTTTCATTGGAGAAAAACAAAACAACAGTGAAGGTGAAATTATTACCGTGTAGCATGTAGAAAACTTTGGATTTTATGATGGAGCAAGGCTGTGGAAACATGCAGTGATATATGGCGTCTCACTGAACCTTTGTTCAGCTGCGTGCACGGCTTTTGCTAGGGATATTTTCAGTCCCTCCTCTGAAAGTGATGCTCAGTGTTCAGAAAGAATTTATGGATTTGACTGAAGGGATTTGAAAAGTAATTGAAATGTAAAAGTAGAGCTTAAAGCTGCAGAATTCCCCTTGG
Seq C2 exon
CAAACAGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(8.1=62.5)
A:
NA
C2:
PF0246917=Fasciclin=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]