GgaINT0020593 @ galGal4
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr12:616615-616954:+
Coord C1 exon
chr12:616615-616628
Coord A exon
chr12:616629-616837
Coord C2 exon
chr12:616838-616954
Length
209 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTTT
5' ss Score
2.28
3' ss Seq
CAACAGAAATCTCTCTTCAGCAT
3' ss Score
2.71
Exon sequences
Seq C1 exon
CAAACAGGTGTCAG
Seq A exon
GTGTTTTGACTGAACTCCCATCTGATTGCCAACAGCACTCATACCACATGGCAGGAGGGCCTGCTCTGCAAACACTGTCTTTCTGCATGTCCATCCCCCAGGACTGCAAAAGCAGGGTGGCTGTGGGTTATGTTTTATGGAACAGATGTGGCACAGGCATGTCTTATTTGTTCATCTTTGTGCTTTCGACAACAGAAATCTCTCTTCAG
Seq C2 exon
CATCCCAGCAGGAACCAATGTCACTGTCCTGGTGCCATCAGAGGAAGCTATCAAAAGCTTGAACAGCAGTGAGAAAGATTTCTGGCTGACCCCCTACATGCTGCCATTTCTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(3.3=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]