GgaINT0021379 @ galGal3
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
NA
Coordinates
chr12:11831994-11832441:+
Coord C1 exon
chr12:11831994-11832182
Coord A exon
chr12:11832183-11832261
Coord C2 exon
chr12:11832262-11832441
Length
79 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CTGCAGTGACGTCCCCACAGCGT
3' ss Score
5.11
Exon sequences
Seq C1 exon
GGTGCGACTGCAACGAGCACTCACGGCGCTGCCACTTCGACATGGCCGTGTTCCTGGCCACCGGGAATACCAGCGGGGCCGTGTGCGACGGCTGCCAGCACAACACCATGGGGCGCCGCTGCCACCTCTGCAAGCCCTTCTACTACCGGCACCCGCGCTCCGATATCCGCGCTCCCACCGCCTGCGTCC
Seq A exon
GTGAGTGCTCCCGGCCCTGTTGCCCCCAACCCCGTGTCCCCCACTGCCACCCGCCCCAGCTGCAGTGACGTCCCCACAG
Seq C2 exon
CGTGTGACTGCGACCCGGCGGGATCGCTGGATGGCGGCGCCTGCGACGCACACACGGACGTGGCGCTGGGCATGATCGCGGGGCAGTGCCGCTGCAAGGAGAACGTGGCCGGGCCACGCTGCGACCGCTGCCAGCACGGAGCCTACGGCCTCAGCCAGGGAGACCCACAGGGCTGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGCAAGCCCTTCTACT
R:
GGCCACGTTCTCCTTGCAG
Band lengths:
176-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]