GgaINT0021381 @ galGal3
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
NA
Coordinates
chr12:11839316-11839584:+
Coord C1 exon
chr12:11839316-11839428
Coord A exon
chr12:11839429-11839504
Coord C2 exon
chr12:11839505-11839584
Length
76 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GACCCCATTGCTCTCCACAGCCT
3' ss Score
6.77
Exon sequences
Seq C1 exon
GGTGTCTGTGTGACCCCCGCGGCACGGTGGCCGATGGCAGCCAGTGTGACCCCATCAGCGGTGACTGCCTCTGCAAGCGGCTGGTGACCGGGCGCAGCTGCGACCAGTGTCTG
Seq A exon
GTGAGCGGGGCCCTGCACAGTGCTCAGGGCCGTGGCACCGTGGCCATCTGCTCGCTGACCCCATTGCTCTCCACAG
Seq C2 exon
CCTGAACACTGGGCTCTCAGCCACGATCTCCCTGGCTGCCAGCCTTGTGAGTGTGACGTGGGAGGTGCCCACGACAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(72.0=94.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(24.0=44.4),PF0005319=Laminin_EGF=PU(22.9=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCTGTGTGACCCCCG
R:
CTCCCACGTCACACTCACAAG
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]