GgaINT0021387 @ galGal4
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11549725-11550128:+
Coord C1 exon
chr12:11549725-11549917
Coord A exon
chr12:11549918-11549984
Coord C2 exon
chr12:11549985-11550128
Length
67 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
TCACTGTGTCCTGCCCGCAGCCT
3' ss Score
11.03
Exon sequences
Seq C1 exon
CTGGTGCTCCTCCCCCGTTATTCCTCCATGGAAATGTTCATCGCGGGTGACCCTGCTGCTATGGGACGTCGGGAGACCTTCGAGAGGTACCGCTGCGCTCAGCATTTCCACACTGTGGTGCTGTCGCCAGTGGCCGAGCCCTGCTCCCGGCTCCTGCACAGCCTCTCAGCCATCCTGCACAATGGGGCACTGC
Seq A exon
GTGAGTACGGCCCTACACACCCCACACCCCATGCTGGTGACCGGCGCTCACTGTGTCCTGCCCGCAG
Seq C2 exon
CCTGCCTCTGCGACCCGCAGGGCTTGCTCAGCGCCGAGTGCCAACCCCAGGGCGGGCAGTGCCGCTGCAAGCCCAACGTCGTGGGACGGCGCTGCCACCGCTGCTCCCCGGGCACCTTCGGCTTCGGGCCCGGCGGGTGCCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCAGCATTTCCACACTGT
R:
ACGACGTTGGGCTTGCAG
Band lengths:
180-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]