GgaINT0021395 @ galGal3
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
NA
Coordinates
chr12:11842980-11844095:+
Coord C1 exon
chr12:11842980-11843177
Coord A exon
chr12:11843178-11843932
Coord C2 exon
chr12:11843933-11844095
Length
755 bp
Sequences
Splice sites
5' ss Seq
GGGGTGTGG
5' ss Score
0.67
3' ss Seq
NNNNNNNNNNNNNNNNNNNNGAG
3' ss Score
0
Exon sequences
Seq C1 exon
CCCGGGCTCTGGGAGCAGCGGGCCCAGCCCTCCCTGCAGCACACCGGGAGCTGCCCGGGTGCCCTTCGAGGGGCACCTTTCCGGCGGCTGGAGGAGAGCCTGGCCACCATACGTGATGCAGTGGCTGCCCGCAATGCCACCGCCGCCACTGCCACGTTCCTGACACGTGCCACAGAGGGGTTTGCGGTGAGCACAGGG
Seq A exon
GTGTGGGGCACAGCTCTGGGGACATGGGGCAGAGCTCTGTGAGCGTTGGCACCTCCTTGCTTTGGCAGGCAGCAGATTCGGGGGAAAGCCAACTGGAGAAAGGCTGACCACGGGCTTGGGAGAGGTTGAGCCCTGAAACGGGTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Seq C2 exon
GAGAAGCTGACACGGCTGGAGAGTGAGCTGACGGTGGCACAGGATGCCAATTTCAACGCCAGCCACGTGCTGGGCATGGTGGACCGGGGGGCCCGCACCCTCAACCACAGCCTACGTGAGCTGGAGCAGCGGCTGCATGCACTCAAGACCTCAAATTTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCTGCAGCACACC
R:
CAAGGAAATTTGAGGTCTTGAGTGC
Band lengths:
334-1089
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]