GgaINT0022435 @ galGal3
Intron Retention
Gene
ENSGALG00000004476 | SEMA3G
Description
NA
Coordinates
chr12:2949058-2949420:-
Coord C1 exon
chr12:2949304-2949420
Coord A exon
chr12:2949201-2949303
Coord C2 exon
chr12:2949058-2949200
Length
103 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTG
5' ss Score
2.77
3' ss Seq
CTTTCTTGGCTCTCTTGCAGACC
3' ss Score
10.9
Exon sequences
Seq C1 exon
GTGGGGAGCTCTATGCTGGCCTCACTGCGGACTTCCTCGGCCGTGATCCCGGCATCTTCCGCAGCACCGGGACCCGCGCCGCGCTGCGCACTGAGGTGGACCAGCGCCTGCTCAATG
Seq A exon
GTATTGGCCATCCCGTGCCCTCACATGGGTCTTCCTCACCCATTTCTAGCCATTCTGTGGGCTGCAGAGATGGCAGCTGCTCCCTTTCTTGGCTCTCTTGCAG
Seq C2 exon
ACCCCAAATTCGTGGCTGCTTACATGATCCCAGACAACGATGATCGAGACGATGACAAAGCCTATTTCTTCTTCACGGAGAAGGTGGTGGAGGCAGACAGCAAGGAGCACACCATCGTCAGCCGGGTGGCACGGGTCTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476:ENSGALT00000007127:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.9=100)
A:
NA
C2:
PF0140314=Sema=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTATGCTGGCCTCACTGC
R:
CTGACGATGGTGTGCTCCTTG
Band lengths:
230-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]