GgaINT0025829 @ galGal4
Intron Retention
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1780220-1780611:-
Coord C1 exon
chr11:1780456-1780611
Coord A exon
chr11:1780354-1780455
Coord C2 exon
chr11:1780220-1780353
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTAATTCTTCTTGATGTTAGATC
3' ss Score
5.52
Exon sequences
Seq C1 exon
CTCTCATGTGTGACCTCAAAGTTCCCCGCTGGGACTTCCAGACGGGCAGACAGCTGCGTACCTCCCCGCTGTACGACCGCCTGGATGCCCAGGGGGCCAGGTGGATGGAGAAGCACGGCTTTGAGAGGGTCAAATACTTCGTCCCACCTGGGAAAG
Seq A exon
GTGAGACCGTGTTTTCCTCTGCCTGGTGCGTCTGTATTGGCCTACATTTGATGTTAATTTGTTCCACTTATGAACTGTGGCTTTAATTCTTCTTGATGTTAG
Seq C2 exon
ATCTGCTGGATTTGGATCAGAGCAAAACCTTCTACAAACCGGACTGGTTTGATATTGTGGGTTCCGAAGTCAAGTGCTGCAAGGAAGCAGTCTGTGTGATCGACATGTCGTCTTTTACCAAGTTTGAGATAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690:ENSGALT00000004241:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157116=GCV_T=PU(5.5=26.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGACCTCAAAGTTCCCCG
R:
CACACAGACTGCTTCCTTGCA
Band lengths:
247-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]