GgaINT0026653 @ galGal3
Intron Retention
Gene
ENSGALG00000001559 | ZP3_CHICK
Description
NA
Coordinates
chr10:3498273-3498564:+
Coord C1 exon
chr10:3498273-3498403
Coord A exon
chr10:3498404-3498474
Coord C2 exon
chr10:3498475-3498564
Length
71 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CATGGTTCCATCATTCCCAGGGA
3' ss Score
7.2
Exon sequences
Seq C1 exon
CTGGGTGCCAGTGGAAGGCAGCCGGGATGTCTGCAACTGCTGTGAGACAGGCAACTGCGAGCCGCCTGCGCTCTCCCGGAGGCTCAACCCCATGGAGAGATGGCAGAGCCGCCGCTTCCGTCGTGATGCCG
Seq A exon
GTAAGGTCCCCCGGTGGGGCTGGGGAGACCCGGGCAGGGAGGAGCGCAGCTCATGGTTCCATCATTCCCAG
Seq C2 exon
GGAAAGAGGTTGCAGCTGATGTGGTCATTGGCCCCGTGTTGCTCTCGGCGGACCCAGGAGCTGTGGGACAGCAGGAAGAGGGTGGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001559:ENSGALT00000002370:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCTGTGAGACAGGCAA
R:
CCTCTTCCTGCTGTCCCACA
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]