GgaINT0026654 @ galGal4
Intron Retention
Gene
ENSGALG00000001559 | ZP3
Description
Zona pellucida sperm-binding protein 3 Processed zona pellucida sperm-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P79762]
Coordinates
chr10:2134021-2134350:+
Coord C1 exon
chr10:2134021-2134110
Coord A exon
chr10:2134111-2134183
Coord C2 exon
chr10:2134184-2134350
Length
73 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GGCTGGGTTTGGGTTTGCAGGTG
3' ss Score
6.63
Exon sequences
Seq C1 exon
GGAAAGAGGTTGCAGCTGATGTGGTCATTGGCCCCGTGTTGCTCTCGGCGGACCCAGGAGCTGTGGGACAGCAGGAAGAGGGTGGTGACG
Seq A exon
GTGAGTCCCTGTGGTTGTGCCCTTGTGGTGTGGCTGCAGTGCACTGCTCTGACGGCTGGGTTTGGGTTTGCAG
Seq C2 exon
GTGCGGCGGTGATGGTGCCCAGCGTGGGGACGGGGCTGGTGTGCGTGGCCGTGGCTGTAGCTCTGGCTGCCGTTGGGGTGGCTGTAGGTATTGCACGCAAGGGATGCACCCGAACCTCAGCTGCGGTGTGAGTGCAGGGCGAGCCGTGAATAAAGCCTGGAAAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001559:ENSGALT00000002370:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGTTGCAGCTGATGTGG
R:
GTGCAATACCTACAGCCACCC
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]