GgaINT0028453 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NPF5]
Coordinates
chr10:2128396-2128780:+
Coord C1 exon
chr10:2128396-2128573
Coord A exon
chr10:2128574-2128659
Coord C2 exon
chr10:2128660-2128780
Length
86 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGATATCTGTTTGCACCTAGGTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATGACTGGAGCACCGAGAGGGCCTCTGCTGTGTTCCAGCTGGGGGAGGTCCTCCGCATGCAGGCGAGTGTCAGCGTGGGGAACCACGCACCTCTGAGGCTCTTCGTGGACAGCTGCGTGGCCACCCCCAGCCCAGACAGGGGCTCCTCTCCCCACTATGCCTTCATTGACTTCAGTGG
Seq A exon
GTAAGAGCTGCCTGTGCCACGGTCTTGGGTCACCTCTCTGTAAGCCTTGGCTCTCGGTCACCTGGCTGATATCTGTTTGCACCTAG
Seq C2 exon
GTGCATGGTGGATGGGCGGCTGGATGACACCACCTCGACTTTTATATCCCCAAGGCCCCGGCTAGATGTGCTTCAGTTTGCAGTAGATGTGTTCAAGTTTGCAGAAGACTCCAGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001552:ENSGALT00000002358:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(22.7=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGGCTCTTCGTGGACA
R:
AAACTGAAGCACATCTAGCCGG
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]