GgaINT0028832 @ galGal3
Intron Retention
Gene
ENSGALG00000006725 | ACAN
Description
NA
Coordinates
chr10:14734527-14735612:-
Coord C1 exon
chr10:14735430-14735612
Coord A exon
chr10:14734623-14735429
Coord C2 exon
chr10:14734527-14734622
Length
807 bp
Sequences
Splice sites
5' ss Seq
ACCGTACGT
5' ss Score
8.98
3' ss Seq
GATTCCATTTCACCCCACAGCCT
3' ss Score
6.9
Exon sequences
Seq C1 exon
TTGCCTGTGGGGACCCACCTGTAGTGGAGAACGCGCGGACCTTTGGCCGGAAGAAGGACCGCTATGAGATCAACTCCCTGGTGCGGTACCAGTGTGACCACGGCTACATCCAGCGCCACGTGCCCACCATCCGCTGCCAACCCAACGGGCACTGGGAGGAACCGCGGATATCCTGCACAAACC
Seq A exon
GTACGTCTCAGCCATCCCGATCCCAATAATCCACACCTGTGGGGTGGTGGAGAGGGATGCCCTTGGCCAATATTTTCCTCCCAGCTCCCCTCTGGGGATGTGGGTATTCAAGGTGCTGGATCCATGCAGCTGGGAGGAATGGGAATCTAATTAATCATAGGATCACAGAATGGCTTGAGTTGGAAGGGACCTTAAAGATCACTGAGCTCCAACCTCCTGCTGTGGGCTGGTTGTCCCCCACCGCATCAGGCTGCTCAGGGCCCCATCCAACCTGGACTTGAGCACCTCCAGGTGCATTGGGTGGCACTGGGTGTAGGGCAGTGCTGAGCCATGGGGAGATGCCCTTCTGGAAGCTTTCCCAAGGTAGGGCTGTGGGATGGAGCAAAATAGCTTAATAAGAGCCAAGGCTACTTAAAGAAAGGAATCAAAAAGGAGCAGCTCCTGCAGCTGGTGAGTAGCAGAGGACGGGACTGTGGATCCGTGCCGATGGGACAGGGCTGGCCCCAGGGATGGGGCCGGGTTCCTGGCCCTGCTCGAGGCATTCCAGCCCATCCCCAGGCTGCCTACACCCCGCTCCCATCCCTGCTCGGAGCTTCCCAACAATGACATCCAGCTCAGCCAAATCACATCCATCAAACGCCGGCCGGCTCCTGGCCAGCTCCGCTCCAGCCCGGTCCCAGAGCTGGGGAAAGCAGGCGGGAGGGACGGAGGAGAGCACAATGCTGCACTCCTACTGCTGCGTTTTCCCTGCCTTCCTTCCTCCCCCGTTTCTCCTCGTCCCACTGACGATTCCATTTCACCCCACAG
Seq C2 exon
CCTCCAGCTACCAACGCCGGCTATACAAGAGGAGCCCCCGGAGCCGGTTGAGACCCGGTGTCGTGCACAGACCCACCCATTAGAGCGGGGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006725:ENSGALT00000038569:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.593
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTAGTGGAGAACGCG
R:
CCCTCGCCCCGCTCTAAT
Band lengths:
264-1071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]