GgaINT0029276 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10102246-10103638:+
Coord C1 exon
chr10:10102246-10102343
Coord A exon
chr10:10102344-10103551
Coord C2 exon
chr10:10103552-10103638
Length
1208 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GCATAACTCTGCTTTTTTAGGTT
3' ss Score
8.34
Exon sequences
Seq C1 exon
TTCCGGAGTTCTCTGTCTCTACTGATGGAGACACTCAACGCAACCACCCCTCACTACGTGCGATGCATAAAGCCTAATGATGAAAAGCGGCCTTTTGA
Seq A exon
GTAAGTGTGGTACTTGTTGAGCTTTTTGTATTTGTCGTGATGTTTGGGGTGAAAATACAGCGTTCCGTATGCTTAGGTTTGCTCTTAGCTGATGTGGTATGGATTAATGCCCGATCTCTGGGGAGTAGCAGCTACTGCAGTTTTTTTGAGTTTCCCTCTTGTCCACAGAAGTATTTGTAAGTCGGAAAAGGTATGAGAAGCACTGAACATAACTTTGGCTTTTTCACACACGTTTATTTTACTTCAGTGTTATAGCACAGCTAGATAGTTGTGTTTGCCTAACTCCTGTGTTCAACCTGATAACCACTGACTGAGTGGGAGCTGACCTTGCTGCAGCTGTTGGGTTCTGTGGGCAAGCACATAGCAGCTCTCTAGTTTCAGGTATACGGCTTTTAGTTGGAATGTAATGCGCTGACAAGTGGAATACACACGCCTATGTATACTCTACATATCTGAACAGGAAGGAAGAGGCAACGTTTATGTGTTTCTAAATTAATTTTTAGCAGGATTAGCTCATTTCCATGGAATTGGACAAAATCTCTCCGTGAAAAATATCTTACAGTTTTATTGTCCCTGTACTGAAACCTGATTGTTTTGTGTAGTAGCAATAAAATGGAAAACAGTTTGGATAATATAAAAGTATGTCTGAATTAGACTAGGAAAGCATGGAAAGAACAATGTCACTAACTGTGAGTCACTGAAATCTCTTTGATAGTAATGGACTGATTCTGTAGCACAGTGCTTTGTGCACCTTGGTCCAGAGTTGGAAAGGCTTTTTCCATGCCTTTTGTTGGCAGTTTTGAACCAATATATCCTTATACCAATCTTATCTTATTTATAATTGGTGCACTGAGGAGTACCTGGAGAGGGTTATTCCCAGTAGACCGCTGAGGAAATTCATTTCTGTGTATGTTCTGTGCCTTAACATGATCCTTGACCTCCTGGTAATATGAACAGTCATGCTTCATATAGAAAGGAAAAGGACTTTTCATAAAACAGAAATAAGGACATTATTCCTCTTTTTTGAGGAAGAAAACCTAAATACTCCCTCTTACACCCCAAGAAAAGCAAACAGGTAAGATACCATACAAAATACAGGGAGCTCTTTGTCCTGTGAGCAGAAATAGAAATCCAGTTAGTAGAATTGTTATAATTGTTATGGTGTGGCAAGCTTAGCACATATACAAAGCATAACTCTGCTTTTTTAG
Seq C2 exon
GTTTGACTCAAAAAGGGTGGCTCAGCAACTGCGTGCATGTGGTGTTTTGGAAACCATTCGGATCAGTGCGCAGAGCTATCCGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGGAGTTCTCTGTCTCTACT
R:
GACGGATAGCTCTGCGCAC
Band lengths:
182-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]