GgaINT0030803 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C788]
Coordinates
chr9:15157587-15158441:-
Coord C1 exon
chr9:15158254-15158441
Coord A exon
chr9:15157729-15158253
Coord C2 exon
chr9:15157587-15157728
Length
525 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
CAACGGCATCTTCCTTGCAGGGT
3' ss Score
8.69
Exon sequences
Seq C1 exon
AGAAAGTCCAGAAGGAGCTGGATGCTGTTCTGGGTTCTTCCCACCAAATCGACTATGAGGATCGGAAGAAACTGCCTTATACAAATGCTGTGATTCACGAGATCATTCGCTTTAGCAGCATCATTTTAATCACTATTCCTAGGCAAGCAGTGAAGGATACAACTGTGTTGGGTTATCAGGTTCCGAAG
Seq A exon
GTATCCTGTCTTTTCCAGTGTGATCTCTGGCCACATCTTCCTGCACATTACTGCTCTGCGCTCTCCCTTTGCCTTGACAAATATAAGTTAAGATCTACTATTCCATTTGCAGGATGTGCTGTTTTTTGTTTGTAAATCTATCAGAGCTTGTCAGAAGTCTCATGTTGGTAGGTTTAGGATAAGAAGGTAAATAACCTCCCACTCTTTATTCTGTTGCATTTGCTAACAGAATGGAAAAGGAGACATGGAGGGAATAAAGCAGGGAAATTTCTGAAACTGAGATAAAGAGGTTTCTTTTCTTTCTTTCTTTATTTTTGAAGAAACAAACACACAAAAACATTTTAAAAGCCCTCCACAAGATGGGACAGTTTGTGATAAACATCTTTTCCCAATAAAATACTTGTTTTATTCTTACCGTGTGCTCAGCAGTGCTCCAAAATCTATGTGGAATTCATTTGTGTCCTTTTAGTCTTGATGTTTGAGAAATACAGAGGCAGAACTGAGCCAACGGCATCTTCCTTGCAG
Seq C2 exon
GGTACCATCATCATGGCAAACATAGACTCAACTCTTTTTGACCCTGAGTATTGGGAGACCCCTCACCAGTTCAACCCTGGCCATTTCTTGGACAAGGATGGGAATTTTGTGATCCGAGAGGCGTTCCTAGCCTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008178:ENSGALT00000013305:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATGCTGTTCTGGGTTC
R:
CTGCTGAGAAGGCTAGGAACG
Band lengths:
314-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]