GgaINT0031314 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19794086-19796119:-
Coord C1 exon
chr9:19795991-19796119
Coord A exon
chr9:19794215-19795990
Coord C2 exon
chr9:19794086-19794214
Length
1776 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGTCCACACGTGGCCAGCAGAAT
3' ss Score
2.7
Exon sequences
Seq C1 exon
TGTGTCCCCAGGGACGGTTCGGCCCCAGCTGCCGCCTGACATGCAGCTGTCAGAACGGTGCTATCTGTGACCACGTGGATGGCAGCTGCACTTGTGGACTTGGCTGGACAGGAAAATCGTGTGAGAAAG
Seq A exon
GTAATGTCCTGCTTTGATAGTAGTGAACACATACATTCAAGCAGGGGTTTGCAGTGACTGTGGGCCTTCAAAAAAGGAGCAGGTTGTGCTTAATTAATCTCACTACCAGCTGCATTCATCTTTGTAGCTTCTCTCATGCTGCCTTGCCCAAAGTTAGAGCTTTAGGTCTCTTTTTAGAAACAGTTTCCTCATGAGTCTTGCTCTATAATCCTTGTAAATTCCTTTGAATGGACTCTTATTTCTTCTCCTATCCAACTTTTTGTTCTTTTGTTCATGGGAACATTTTTTTGGTATCTTCTTTGAATTGCTCCCCTGAGGTCAGCAGAAGCCAGCATCTCTATCCCATCTTGTTATCTCCTCTCTCCATTTTCTCTTCCCTTTGGCACTAGACTGCAGTTGAACTTCTCATGTATTGACTTCCCTGATGTTCTGGCAACATCTGTCCAAAACAATTGAAATTATCATGTTATCTTGTCCTCACTTTTCTGTGTCAGCTCTCCCTTACACAAGACAAAATACACTTAACAGAATGAGCAGTCTTTTTGTGTGTCTTTTCTTCCTTTCCATCTCCTGAAAGACATGAGATTCCGAGCCCGGCTTTACATATACAGAATAGCTGCCAACTGGAGTGATGAAGTCAATGCCACTGTGGATGAGCACTAAATAACCTCTTCCCTCCAACGCAAAATTAGAGCTGTTTACCAATAACTGGATAACATAGTGTTGTGTGGACTGTTTGTGCATCTCTGCCTGCTCCTTGAAATCTTTATAATCATACATGGGCTGTGTTTGGGCTGCAAACCGTGATGGGGTTGTGCAGATGTGGAACAGTGTCTCATGTGTGCATCCCCTAGATATGCTTAAATAAAACAACATTGGTATCAAACACTGGGGAGAGATGTGCACATTGCATAAAGGGTGGAGTGCTGTATCACTAGGAAGATCTTCAGGGTTGTCTTTTGACATACATACCAAGCTATTGGAAAACTGAATCTTTATTTCCACGGCAATGTGGTTTTGAGTCTGTTTTGACTAGAAATCAAAGACATCTAATCATGTATCTCTTTCTGGTGATTAGATACCATGTTCTCAGAAGATCTTATCTGCCATTTGTAGTTGTGAATCCAATTATGTACGTGGCCATGCTCAGTTAAGTCAGTCTGCACAGCATCCAGTTATCACTTCTGCAGAACTTATGCCCATATTTGTTATATTAACACAGCCACTTTTGCATGACATGGCTTTCAACAATTTGAGATGCACTTAGTTCAGTACAAGTAGATATCTAGTTATACATGGAAAACTGATGTGTGAAAAAGAGACCTTCCCATTTCATGAGGAGGTCAAATACTGTGAATTCCAATGATAACATGGAGAAGTAAAAGCTGCATATTTTCTTTCACACTTTGTATGTGTCTAAAAGAAAGCATTGCTGTAGATGTAGAGGGTGGAAAAAGAAGATACCATTTATTATGTGTCTTTACAACACTTGAGGGGCTGGGAAGGCTCAAGATAAACAATATAGCGCAAGAAAACTGAACTCTTCAAACATCTATAAAGTAGAAATCCTCATCAGAGTATGTAAATACATAATAATGGTGCAGAAATGCTGTCTTCAGTGAACACGACTGCATGAAGAGAAAGAAATGCATGAGCGTTCACCTGAGCTCTGCAAGTTACTATGTGGGCATCATGCCTCAGCTGTAAAAGCCATCTGATTTTGGTGTGTGATCAGTGGTTTCTTGTCTTTTCTCTTTGTCCACACGTGGCCAGCAG
Seq C2 exon
AATGTCTCCCTGGCAAGTACGGCCCCAACTGCAGCTTGGACTGCTCATGCCAGCACAACGGCACCTGCGACAGGTTCACGGGCTGCTGCCTCTGCCCCGCGGGGTTCTACGGGCGCTCCTGTGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGCCGCCTGACAT
R:
CTCACAGGAGCGCCCGTAG
Band lengths:
230-2006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]