GgaINT0032719 @ galGal4
Intron Retention
Gene
ENSGALG00000007906 | CHRNG
Description
acetylcholine receptor subunit gamma precursor [Source:RefSeq peptide;Acc:NP_001026739]
Coordinates
chr9:15080884-15081235:+
Coord C1 exon
chr9:15080884-15080993
Coord A exon
chr9:15080994-15081079
Coord C2 exon
chr9:15081080-15081235
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
GCCTGCTCTTTTCCCCGCAGCAT
3' ss Score
11.51
Exon sequences
Seq C1 exon
CAATGGTCTGACTATCGCCTGCGGTGGGACCCCGATAAATACGATGACATCCAGCAGCTGCGGGTGCCCTCCACCATGGTCTGGCTGCCCGACATTGTCTTGGAGAACAA
Seq A exon
GTGAGGCCACGCTAGGGTACAGCAGGGACACTTTCCCACATGTGGTTGGCCTCACTCTGGGGCTGAGCCTGCTCTTTTCCCCGCAG
Seq C2 exon
CATCGATGGGACATTTGAGATCACACTCTATACCAACGTGCTAGTGTACCCTGATGGCAGCATCTACTGGCTGCCCCCCGCCATCTACCGCAGCTCCTGCTCCATCCACGTCACCTACTTCCCCTTTGACTGGCAGAACTGCACCATGGTCTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906:ENSGALT00000012833:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.6=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGACATTGTCTTGGAG
R:
TGCAGTTCTGCCAGTCAAAGG
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]