GgaINT0032721 @ galGal4
Intron Retention
Gene
ENSGALG00000007906 | CHRNG
Description
acetylcholine receptor subunit gamma precursor [Source:RefSeq peptide;Acc:NP_001026739]
Coordinates
chr9:15081576-15082580:+
Coord C1 exon
chr9:15081576-15081673
Coord A exon
chr9:15081674-15082376
Coord C2 exon
chr9:15082377-15082580
Length
703 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GTGGCATCACCGCATGGCAGAGA
3' ss Score
1.22
Exon sequences
Seq C1 exon
GTCCCAGACATACAGCGCGAACGAAATCAACCTGCTGCTGACAGTGGAGGAAGGCCAGACCATAGAGTGGATCTTCATTGACCCCGAAGCCTTTACAG
Seq A exon
GTAACCCCGTGACCCCCCCATGGCATCCCAAGGACAAACATTCCAAGGACAAGCATCCCACTCCATGATGCCCCACAGCCTGCAGCAATGCCGGTGGCTGCTGAAATCAGTCAGTGGCAGAGGGGGGAGGATGGGGGGGCTGTTAGCAGCCCTTGCCATTACACGGGCACTTAAGTTATTAGTGGAAGATGGAGCAGGGGAAGAGATTTGTTTTACCAGCCCCCCCGGCTCGCAGCACTCACCGCTTGGCAGTCCCTCCCGGAGAGCTGCTCCTGGCAGTTTGATTGATGCTGGGAAGGTATCTGTCACGGCCAAACGATGACGTTTTCCATCACATTTTAATTGCATATTGAAGGAACAAAATGCTTTTCGGGCAGCGAGATTTATTTTTTCATTACCGGCCCAAGCTGCGATCTTGATTGGGAAAAATCTATCGCTCCCGCAGACAGCGGGGGAAAACAACGCGCCTTAATAAAGCGTCATGCTTGGCTTCCCCACGGCTGCCTGGTGGCAGGGAGATGGGGGACTCCCAGCCCCGCACATAACTCATCCCCAAAGGGCTGCAGGTATCCCCTGCTATAGCTTCCAGGGGAACTTCGGAGCACTCCTCAGTGCTCAGCTCCCCATTGTGGCCCTGGCACCTTCCACCCGCCTGGTGCCACTGGGATGTGGGGACTCAAATGGTGGCATCACCGCATGGCAG
Seq C2 exon
AGAATGGAGAATGGGCCATCAAGCACCGCCCTGCACGGAAGATCATCAATTCAGGGCGCTTCACCCCAGATGACATCCAGTACCAGCAGGTGATCTTCTACCTCATCATCCAACGCAAGCCGCTCTTCTACATCATCAACATCATCGTGCCCTGTGTTCTCATCTCCTCCATGGCTGTGCTGGTCTACTTTCTGCCTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906:ENSGALT00000012833:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(15.2=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=PD(18.4=58.0),PF0293211=Neur_chan_memb=PU(8.6=30.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGACATACAGCGCGAA
R:
CTTTGGCAGGCAGAAAGTAGAC
Band lengths:
302-1005
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]