GgaINT0032798 @ galGal3
Intron Retention
Gene
ENSGALG00000007899 | F1NJ26_CHICK
Description
NA
Coordinates
chr9:16706745-16707062:+
Coord C1 exon
chr9:16706745-16706789
Coord A exon
chr9:16706790-16706952
Coord C2 exon
chr9:16706953-16707062
Length
163 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCAGGGGTGTCTCCCACCAGAGC
3' ss Score
6.21
Exon sequences
Seq C1 exon
AAAGAGGTGGACGAGACACTCACCACCAACGTATGGGTTGAACAA
Seq A exon
GTGAGTAGGGGCAGGAGGGGCTGGGGGAACTGGGGCCAACACTGACAATCTCCTGCCCAGACCCCTCTTTCCTCTTGGTACCATCATCCCCATGCCATCTCCATGGGCAAGGGGTGTCACTGGCCTGATCGTGGTGAGGTGACCCAGGGGTGTCTCCCACCAG
Seq C2 exon
AGCTGGACTGATTACCGCCTGCAGTGGAACACATCTGAGTTTGGGGGCGTCGACGTGCTCCGCCTGCTGCCAGAGATGCTGTGGCTGCCTGAGATAGTCCTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899:ENSGALT00000012824:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.2=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGTGGACGAGACACTCA
R:
TGTTCTCCAGGACTATCTCAGGC
Band lengths:
154-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]