GgaINT0032799 @ galGal4
Intron Retention
Gene
ENSGALG00000007899 | CHRND
Description
acetylcholine receptor subunit delta precursor [Source:RefSeq peptide;Acc:NP_001026488]
Coordinates
chr9:15077122-15077504:+
Coord C1 exon
chr9:15077122-15077231
Coord A exon
chr9:15077232-15077348
Coord C2 exon
chr9:15077349-15077504
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
CCTCAGTTTCTCTCATGCAGCAA
3' ss Score
6.98
Exon sequences
Seq C1 exon
AGCTGGACTGATTACCGCCTGCAGTGGAACACATCTGAGTTTGGGGGCGTCGACGTGCTCCGCCTGCTGCCAGAGATGCTGTGGCTGCCTGAGATAGTCCTGGAGAACAA
Seq A exon
GTGAGCAGAGCTTGGTTCCCCTCTCCAATCTCCCTGGGCAAGCATCCTCAGCCAGAGCTGTGCCCAGTGCCCAGGGCTCTCCCTTGCCTCGCCACCACCTCAGTTTCTCTCATGCAG
Seq C2 exon
CAATGACGGGCTCTTTGAAGTTGCCTACTACTGCAACGTGCTGGTCTACAACACTGGCTACGTCTACTGGCTGCCCCCCGCCATCTTCCGCAGCGCCTGCCCCATCAATGTCAACTTCTTCCCCTTTGATTGGCAGAACTGCACCCTCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899:ENSGALT00000012824:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.1=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGATTACCGCCTGCAGTG
R:
ATTTGAGGGTGCAGTTCTGCC
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]