GgaINT0032805 @ galGal4
Intron Retention
Gene
ENSGALG00000007899 | CHRND
Description
acetylcholine receptor subunit delta precursor [Source:RefSeq peptide;Acc:NP_001026488]
Coordinates
chr9:15078721-15079120:+
Coord C1 exon
chr9:15078721-15078922
Coord A exon
chr9:15078923-15079007
Coord C2 exon
chr9:15079008-15079120
Length
85 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGC
5' ss Score
3.59
3' ss Seq
CAGGGTCATCCCGTCCCCAGGCT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTGTTCCTGGAGATCCTGCCCCGCTTGTTGCACATGTCACACCCAGCTGAGAGCCCAGCAGGTGCCCCGTGCATCCGGCGCTGCAGCTCGGCTGGGTACATCGCCAAGGCAGAGGAGTACTACAGCGTCAAGTCCCGCAGCGAGCTCATGTTTGAGAAGCAGTCAGAGAGGCACGGGCTGGCCAGCCGTGTCACCCCTGCCC
Seq A exon
GTGAGCCTCAGCCCCCCTGCGGGGATGGGGGGACGTGGGATGGGTGGCTGCTGTCCTTGGGGGCTCAGGGTCATCCCGTCCCCAG
Seq C2 exon
GCTTTGCACCAGCAGCCACGAGCGAGGAGCAGCTCTATGATCACCTGAAACCCACCCTGGATGAGGCCAACTTCATTGTCAAGCATATGCGGGAGAAAAACAGCTACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899:ENSGALT00000012824:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(28.6=100),PF0000317=7tm_3=PD(30.0=48.5)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAGGAGTACTACAGCG
R:
ATGAAGTTGGCCTCATCCAGG
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]