GgaINT0033773 @ galGal3
Intron Retention
Gene
ENSGALG00000005550 | ST6GAL1
Description
NA
Coordinates
chr9:6298123-6304966:+
Coord C1 exon
chr9:6298123-6298142
Coord A exon
chr9:6298143-6304808
Coord C2 exon
chr9:6304809-6304966
Length
6666 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
CTCCTTAATTTCTTTCCTAGGCC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GAGAAGTGCCGCGCTCGGTG
Seq A exon
GTAGGTCCGTTAAGTTCGTTGCGGCCGGCTCTGACCGAGCGCTCTCGCGACGGACGGGTCGCGGAGCGGCGGTGGTGCCCGGGGGTGTCCGGCGGCCGTGGCGGCGGGCCGTGCCGTGCCGTGGGCTCAGGGAGGAACGCGCGGCTATCTCCTTCACCTGCTTGGTCCCCGCTCAAGCGAGCCTGCGTCTGCGAGGCTCCAATAACGCGTTGCGGATGCGCGGTCGCGGCTGCGAAGGTGCGTTGTCGTTGGCCGAGGGCAAATTTTTCTGGGGTCGGAATAGGCGGGTGTGTGAGTGTTGGTGCGTGGCGGTTACTGACAGCTCTGCGCTGCGAGGGGCTGGAAATGAATGGGAGGACGGGTCCCAGAAGGAGGCTGCCGAGGGCGCGCTAATTAATAGCAGAGGGGATGCAGCTGGTGATGCTTCTTAGCTTTGGCTGCGTCCGTAGTGCTGAGGACGCAGGGCAGTGTGAGCCGGAGCCCACCTGGAGCTGCTCTCCCTGCTCTGGGGCCGGGGATGTGGTGCTCGAGGGGTGTCACTGTTCTCATGAGCCGCCGACCCGGTGCACCGGCAGCTGTGTGAGGGACGGATGGTGCAGCAGGGTCACGGTCCTCCTTCCTCCTTACGGAAGGGCTGTGCAGCCCCGGGGGAAAGTGTCATTTCCCTGTTCTCAGCTCAGCATTTGTAAAGATGACAATGAAAGATCTGACAGTATCGCTTTGATGCGGCGTGACGTGCGTTGGCCTCAAAGCCCTCGGCTTTACTGGAAGTGTGCAAATCACTGTTCTGCAAAGGATTCGCAATCAAAGAGCGTTAGGGATTGGTGTGTCCTAACACAGCCCTCCTTTGGTTGCTCACCTCCATCCCACTTCTGGAGCTCTGGAGGGATAACATTGCTGAGCCGGGGGGGAACTCTGTACTTGAGATCATACCGTGTTCAGATAACGTTGGAGGTTGATTCCTCACTGCTTCAGGTGTGCCTGGAGTTGGTGCTGCTCGGTGATGTGCCTGGGGTGTGTGAGCTGCAAATGGTGCCTTTGAATGCTCCTTTAATTATGATTGCGCTGATTAAAGATGTAGGACATGAAAAGAGGTGCTTTCAGTATGAAGTGCTCTTAGATATCTAGCCAGCGGGAGTCACTGTTATCAGATGTGCTCACCGTGTAATTAAAAACCTTGGAAAAACTTACTTAGGGCATTTGTTTATAGGTAAAATTCAGATCCGTTGCCTTTTTTAGCCACGCTCAGCCTCCAGTGAGGTGTGAATCACAGAATTATGCCCTGAGCTGGATGGGACCATCGAGTCCAGCAACGGTGCTGCATCAGTTCCTGCTTTAAGGCAACACTTAAGCGCACTGCTATCTTCTGTGATGATTTCAGCTCTGTAGTTTACAGAACTGCCAGTAATGGGGAGAGGTGTCTATGTATGGGCTTCCCACCGTGTGCCAGTAGGCTGCACGTGCTCCCCCAGTTGTATTTATGGATGCCAGCTTTGGGAAAGCTCCTTTGGAGCACGCACATGGAATCACAGAATGTCCCACGTTGGAAGAGACCCATAAGGATCATTGAGTCCAACACATACTGATGTTTTCAACTTCAGACCTTAGGGTATCATGTAGAATTTGGCTCGTAGGAGCTCATGTGTAGGAATACAGCAGGGCTGCGTGGCTGAGCATCTCCAACCTGTGCAAGCTCTGTCCTCTGGGGCTTTGTCTCTGCAGGTCCTGGGCAGTGCACCCGCTGGGCTCAGGTCTGCCCAACCCTTGGCAGCACCTGGCAGGTTCCTGCTGTGTTCCTGCCTCGTGTTGGGTGCCTGAAGGCACAGCCCTGCCAACACGCTGTCAGATGATGCTGAATATTAGCTCACGATCTGCTGCTCACGAGTTATCAGAACCTCTTTTCTCAAACAAACAAACAAAAAAGTTGCACAGAAAGCTGCAACATGTTTTGCTCGTTCCTGCGTCCTTGTGAAAAAAGGGCCTTTTGTGAGATACTCATTTAAAATAGAAGCATTACACAGACTGTCCCTCTCGTGCCAGCAGGATGCTGAAGGGCAGGGAGCCTCCGCTTTGTCCCTTTTGCTCCTGCGCCCTGCGTGCCCCTGCATGGAGCGGTGCCTCTGAGCGGGACCTGGCAGCTGCTGGGATGCTGAGCTGAGCAGTGCTGCCTTGGTCAAATGCACAGCACAACCTCTGAGCGTGCGTTCAGACAGTGAGCAGGGACAGCATCTCCAAGGTGATCTCTACCTGATGCCTCCTGGCTTGTTGGGAGGGGTGCGGGCATCCTGCGGCACTCAGCCCCTTCCCTGGGGTACAAAGTGTCTGGGCTGTGCAGAGCTGTCTGAGTGAGGCCCGATATGAGCCCAGCCTGCCACGTGCACCTTGTGTGCACCACGTGCACCTTGTGTGCAGATGTGCTCTTAGCAGCTCCCTGGTAATGGTGTGCGTGCGTGTCCTGCAGCCCTGGGTGTGGCTGAGGCTCCTGACCCTCGAAGAAGCTGGAAACAAACAGAGTCCCCTGTCATAAACTGTACATCTGTTCCTGCTTATGGTGAGTGGAGCGGTTTGTGTTTTCAGCTGTAAAACTTTGCAGAAAAATAGATAGGGAAATACACGTTCTGCGTTCCGGCTCGTCTTCTGTACCGCTGTAACGCTGCATCTGCTGGTTAGCAAATCAGAGGGCTTCACATCAGTTCAGATTTTCTGCAGGCACCTCGTGTGCACTGACAGAGTTCGTGCCCTATAGGAAGCGCGCTGACAATGCAGAGGGATGGAGTGACAATAGAAATTGTCACGGCAATATTGCAGCAATGACAGCTGCTTACTGAGACGGCTCTCCTGGGGACTGGAATTGGTCCACGCTCATAGTTTTCCCCCTGGAGATGACAGCTCTCAGGGGGCTGCTTTTATCTTGAGACACCATTGAACTCACGGTGCTGGAGTGAAAAAAGGCTTTGTGTTTTCTGGATTCGTTTGTAGGGCAGAGCTGTCAGGAAGCACTGCTGGCTGAAGGGCAGTGCGGAACACCGTGTGCCTGCTGAACAGAGCAGCTTGGGCACAGAGCAGCCCATTAACAATTCCATTGTAAAAACAAACCAAGAAATGCATCAATCACGGGGTTTCCGAGGGTCCTCCAGATCCTTGGTAAACTTGAATCCTATTTGAAATGTACTTTGTTTGATTAGAGGAGGTATCTTCGTGCTGTGACTTGCACTTGCAATCCAGATCGAAACTTCAGGCACGCTCCTGTGTTAACTAAGCTGGGATGTCTTTCCTCTTGGTTCTTTCTTCTGGAGTTTTATTTTTCTTCCCTGGCTGCAGTTCTGCCTTACTCCAAGATGTTACTTTGGTCCCAAGGGGGGACAATCAGTGTGTTATTTCTTGCCTGTCCTTATGACCCAGCTGTAATCCTGTAACACGCTGTGCTAGCAGGAGGCCCTAAGGAAATGAGAGATCTGAACGTACAGGATTATAGTTGCTAGACTCAAACTATCGCCCTTTTTAAGGTTACGTTTCAATACACATGTACATTAGTACCCAGCCCAGCTTTCCTTCCCCCAGCTGAAGAACTGCTGGGTGCTGGGCCCTCCACCAGCACTAACAAAAGCCCAGCCTATAGGCTGATGGTCTGGGCGAGCTTGGCTCAAATACTGCCCATGTTTTAGAAGGGTTTGGAAGGTGCTCGCTGTCTTCCAGGACAGATATTGTGTCTGTGAATTCGAAGCTTCTTTCCCGTCAACAGCTTTTTTTACAGCATCGTTAAGGTGATGTTTACAGAGGTGTGAGGAGCATTGGGAAGAGGGAGCTGAGATGTAGATGTGGTGCTGACCAGTGCAGAGGTGGTAACTTACTGACACTGGGCACATTTGCTAGGGATTTAGTGTGTCAGTGGAGGAAAGCAGAGCTTTTCCTCCTTCCTGATGCCGGGCTCTTGGTACCTTTTGGGGCTGAAGGTGGCCCGTTGTGCTGGGGGAGCAGCGGTTTTAGCAGAGAACCAGGAAAGCACCAACTCAAGGAAATAAGGGAAAAAAAAGGAAGAGGTATGCCGGAGTCAGTGGTGGGCACTAAAGAGGCATAGGGTGGTGGGGAAGAGGAGGGGAAGGCTGAGGGATAAGTGCAACAGAGATGGGGCTCAGGATGGAGGAATCAGGAGCAGGGATGAAGGCAATAGTCCCGGGGCTTCTTTAAGGCTGAGGAGGGAGTGAAATTCATTATTTGTGCCTGTAATATGAAGGGGTGATTTGAGATGCGAGTGCCAAGCTGGAAAAGCCGAAATATCATTACTGGAAGAACACTTTAATTGAAGAATGACTCGCTTGATGAGTTAGTCAGACTGTCTGCTCATGATATAAATTGGGGACCGAGGGATCGTTGGAGTTTTCTGGCTCAGCTGTCTTGAAGTCTGGCCAAAATAGGGTAGTTTACCTACGGGCTGAGGAGTCTGGAAACACGACCAAAGCTTAGCTGTGAGCAGTGGCCCCCTGTGCTGTATGGATGTCTGTGGTGTGGGCTGTGCTGAGCCCTCGGCCAGGCATGGGCTTATACGAGGGTCATGAATCTCTGGGGGAAGAGGTGTGGGAGGCGTGCATGGAAGGAATCTCATTTTCTGTGGATTTATGTGCTACTTGTTACAGCTGTCACTACTCGCTCTGTTACAAGTGTGGGTTTTGGCTGGGAACGTTTTAGGTGTTGTGGCTGTGGCTCAGCAATTTCGTATGTGGAAAATCAGTGGGAATTCCTTCAAGTCCGCACCTGAGGAAAAGCCAACTTCATTGCCACGTGTGGTGATGTGGTGGAGCTGCCTTCCCTCCCTCTCTTACTGGAATCCCATCGTTCCCCATTTGCCCTGGTTGGGAAGGGTGGTATGGCAGCCCTGCAACTCTGCTTTTGCTGTGGTTTTGATCCTGGGAGAAACCCTGCAGTAGTTCTCTCCAGGAATCTGTGGGCAGGTGTATTGGTTCACGTGCACAAGCAGCGTGTTAGGGATTCAGCAGCCTCTGGTTTTGGCTGAACTGCTGGTAAGGAGTTCGTCTTGCGCTCCGTCATCACCTCTGTGCAAAGCACCAGGCTCCTTTAGAGGGACAGCGCTGCTGTGACGCAGTGCAACGCGTGCCTCGGGGTTGAGGAGCTTTCCCCATTACTATGGTCATGCAGTCAGATGAATATTTTATCAGATATTCGTGGATTGTTTAATTGAACGGATAAATAATCATATCCTTTAGTCTAGGGGGGAAAAATTCAAAGAATGTACACTTTAGAGCTAATCCATAATTAAAATTTGATGTCAAAAATGGTGTTAAGTTTCATCGTGAGCACTCTTTAATTGAGTTTCCTTCAGTTCACACTGGAAGGGAATGAAAACGAATGAAATTCATTACCTGAGCTAGAAATGAGAGGGCATACCGAGGTCATTGCTGCATATTAACTCATACTTTTAAAATTCATGGCTGCCATTACTTTGGTTTGGTTTTTCCTATCTGTCTCCATGCAGACAATACTCCAGAAGCATGACTTGTTTTGAGGCATCGTGGAGATGCCTTTTTCCTTTCCCTTTCCCATGTTTTAAAAGACTTGTGATGGCATTTGGGGATGTAAGAGCATTAAGTAACAGCAATAAACAACCAGGATTTCTTTTACCAGAACACAGTGGAGTGTTTTCCTCTGCCACAGCAGCCCTGGGGCACTCACTGAAGCTGAGGAAAGGTGGAGGAGGCATAATTTATGACCTATGGAAAGAAGAGTGAAAGAACTAATGAGAAATCATTCAGGTTGGAAAAGACTTGTAAGATCATCTAGTCCAACCTACCACCAGTGTCACCCGCTGACCATATCCCTCAGCGCCACATCCCTTGGCACAAAGGTAACTTCCCATCCAGCAACAGCAGGTACTCCTGGCAGTGCTGGTGCTGTAGATAGTTGTATGCACATTTGGAGAATATAACTTGTGAGCCCTGTGAGCACTTGGGATCTCTGCTGGCAGCTGACTGCGTGGGTCAGACCATGCCAGGCCATGTGCATGCACTGGGAACTTGCCTGGGGCAGCGTAATTATGGGAGGCTGTGTTTTTCGGGAGGATTGTGTGCACTGACTTGCTAAATAATCTTGTGATTAGTGTCTTATTTAAGAGGATTTTGGGACACGTGCTGTAGTGGCACCATGTTTCTGCTAGATGTAGGGGAGAGGTTAGAAAAATGAACTCTCTAAAGGCTGTGCTGTGCTTCTGGCCAGGCCCGTGGGGTATGTGCTGTGCATCACTGCTCCACCAAACCTCGTCTATGGGCGGTCCAGGAGGCAGGGAGCCCTCCTTTGCACGGGGCTTTATAGCAGCTGTGTTTCTGAGACTTCCTTAGGAGGCCATAATTCAGCCCTATGGGTGGTGTCTTCTGCCCACGGCTTTGTATTAGGAGCTCTGGGCTCACGTCCTGGTGTTGGACTCTGGGCTGTTCTGCAGTCCACAGCTCATGACCAGCAGATTTGGTCCTCAGGAAAGTTTCACTGATTGCTGTTTGGACTCTGTGTGCAGTGTTCTTGAGCACAACTCATGTTTAAAGGTGCTGGCAGCTCGCTCACTGCTTTCACCACCCTGTTCCCGTAGGCCAGCAGTTTCTGGTTAGCCTGTCTGGCTGATGGGACTGTCTCACGTGGTCTCCTTAATTTCTTTCCTAG
Seq C2 exon
GCCAGCAAGCTCGATTAGAAGTGAGATGAGGGCATGAAGAGCTGCTTGCATGGCACAGATGTGGCAGTGGCTCATCTGGATGTCACCTGGCCACCCCCTTGTGACTGGAAGAGTTTGACAGGAGCTGCTGAGGACAGCGAAGGATCCTGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005550:ENSGALT00000008903:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]