GgaINT0035400 @ galGal4
Intron Retention
Gene
ENSGALG00000028773 | Gga.52643
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZIH4]
Coordinates
chr8:7497288-7500393:+
Coord C1 exon
chr8:7497288-7497387
Coord A exon
chr8:7497388-7497766
Coord C2 exon
chr8:7497767-7500393
Length
379 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
GTTCCCTTTTGGCTTTTCAGGGC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GCCTCACAGGCAGCCCAGGAGGCAGAAGACAACGCAAGAAAAGCGAAAAACTCTGTGAACAGCTTGCTTGCTGTCATTAATGACCTTTTAGACCAACTAG
Seq A exon
GTAAGGCTGTCCTTTTTTCTTGTCTCCTAACAGGGAAGTGCTGGCAGCCAGCGTGATGCGGTGCTGTGCTGGGAACCAAACAAATTTTGTTTTCCTAGAAATTAAATTAATGTGGTTTTGGCAAGTGGTTTTTTTTTTTTTTTTTTGGTGGAGTAGCCTCAAAACTCATTGTGCAGTGTTCTGTGCCACTTCCCTGCAAGCTATGGATTCAATATGAGGCACTGGAGGTGGAGCCCCTTCAGTTGCTCTTGTTTCTTACTCAGAGATGGCCTGATACAGATCTTGCTTCTCTCACTCGGAACATGGGATCTGCTCTGTAAGCACCTGGAAGCTTCAAAGGCTTTTTAATGGTCTTCACTGTTCCCTTTTGGCTTTTCAG
Seq C2 exon
GGCAACTGGAGACGGTGGACCTGAACAAACTGAATGAGATTGAGGGTACCCTGAACAGTGCCAAAGACCAGATGAAAGATAGCGACCTGGACCAGAAGGTAGCTTTCCTTGAGAGAGAAGCCAGGAAGCAAGATGATGCGATACAGTCCTACAACAGGGACATTGAGGAAATCCTGAAAGACATTAGCAACCTGGAGGACATCAGGAAGACCTTGCCATCTGGCTGCTTTAACACCCCGTCCATTGAGAAACCCTAAGGGTGTGCTGGGGGTGGAGGGTATTCCCCCGCTGATCGGTGGAGCGATTGTTTGGCTATGGAGTGCCTTAACACACGTTACCTTCTTCCAATCCCCATCTCTTTGCTGCTTGCAGCCTCTGTTTTCTTCTCAAATCAGGATAAGTTGAAAAGGATTTTTTTCCTTTTTTTTTTTTAAGAGAAGCAAATTAAATATCCGTCTTTGGGCATCAAAGGGTTTTTTTTTTTAATATAAATTGTCTTCCTGAGCACTCTGCCTTTGCCCCTTTCTCAGACACAGTTTCCCTTTGATTAGTGCAAGGATGAGAGATGCTCTGGACTCTTTATACTGTTCAGCAATAACCACGTGAGCTGTGTACAGCAAGGCAAAACTAACTCTGCTTTCTCTCCTCACTTCCCCCCTTGACTGTAAATTCCTTGATCTGGAACTCTGTCCCCATGAAGGAAGGGGGTTGGCTACCAAATCATTACTGTAATGGCCAGTATAGCTGCACTCATTCAGATCCCTGTTCCCAACTTCTAACCCTGTGAATTATTTTGTCTGGTTTTGTGACGTTAACCAGTGGCCAATCGGAAACGTTGGTAGCCTTTTACAAACTATCCTCAGCCTCTTTCTCAAATGCTTTCTGTGATGATGCATCGCTCTGAGAAAAACGTGGCCTCCGAGAGGAGCTTTTTGGGAAGATGAGATGCCAGGGGAGCAGTAGGTCCCACCAGCACCGCCGGCTGGTGGAGCAGAAGTTGTGCGTGCAGTCTGCAGGCAGCTGCCTGTTGGGTGGCCCAGGCTGGGGAGTCTGAAAGTGATGAGCTGAGTTCCCATCTGGAGGTGTTGCTGTCAGCGCCAGAGGATTTTTGTTTGAGGTTACAGATGTCCGGGTGGCACGCTGACCTGTTCAAGCAGCAGAAATCTTGCTGAAGAGGAGAGCTGCCATCCAGAGAGCTCTGACAGCTGGGCTGACCTCAACCTGAGTGACTTCAGGTGGGGAACAGAGAGACCTTGAAGATGTCAATGAGAGGATCTTTCTCCCCATCTTCTTCCTGGAGGAGGCAGGTGGCATTTTTACACTTCCTGGTGTTGCTCTCGCCTTTTGTCTTTTACTTTTTAACCCAGCTGTAAGAGCAGTGTTCAGGTTCCTTGAGGTGCTCCCAGGTCTGCTCCCAGCCCGGAGCACGCTCCGCAGCTCTCCCTTGGGCTCTGGCCCAGCATCCCCTCTCTCTTCCTTCAGATCAAGCATGTATCTATCCTTAAACACTATGCAACTTTGTACGTTTGCGTAGCGGGGAAGAAATTATTATCTGACACACACTGGTGCTATTAATTATTTCAAATTTATATTTTTTGTGTGAATGTGATATATATTTTTTTTCCTTTTTTTTTTTAATCATGGTTACAGTGTGAGGAAGTCTCTCGTGCGTGTGTGTGTGTGCGTGTGTAAATATCCTCAGCCATGTTTCCAGAGTGGCACAGCCTGGCCTCCTCTCTGTGCTTTCCCCTGTAACCATCGCAGCACGTGCACCGCACTGCTCCTGCCCCGTTGCCCCCGCAGCAGCCAGTTCTTCCTCTGCCCAGCTTCCCATTTGTGTCCCCCATTTGTGTCTCAGCATCTGCATTGTGTGATACTGGCAATAACCACTGCGCAGGGAGCACACCTCACCCGGTGCCGCTGGGCAGGATGATTCCAGCAAGCCCCGCATCTCCCATCCCCATCTTCTTAGGGTTTCTTGCCATTTACCAAACGCTGCCTTGGGGTTTCCCCACCTGTGAACATAGCTGGTCCATGGAGGAGGGCTCCCCAGTGCTCGCCTTCCCTCCGTGTTCCCGGCTGGCTGCTCTGGTCAGATGGCTGTCTCTAACCACGTCACCTCTCTGCCAAGGCTGTGAGAAGAGCAGATGCGAAGATGCGCGCATGCCCTGGCTGACCTCAGGCCTAAGGTTTCCTGCTTTCTCCTCTGTTTTTTTTTTTTGTTTGTTTTTGTTTTTATTATTATTTTATTATTTTTAATTTTTGTCGTCGTCGTCGTTAAGCTGTTTTTAACAGAATTCTATTTTTAAATAAAAAAAAAAAGTCTTTATAAGCGATCTCTTAATCACTACTGCATTACAGCCATTATTCATTGTATAAGTCCAGTTATTTCTGTACGTGATGTGATGATGAGATGGCTGCTGGTGGAGTGCTGGATGGCAGCGCGTGTCGGTCCCTCATCACTCAGTTCCTGACTGTGGCCCCACAGTACGTGCCTTCACTTCAGCTTTTTGCCTTAATCTGTGGTCTCGCTGTCTGGGGCGGTGAACAAAATGCAACACTTGCAGTTTTTATGTATAAAACAGTATTTCTTATTTATAATAAAGTCTGAATATTTGTAACCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028773:ENSGALT00000039413:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.388
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(24.4=100),PF052626=Borrelia_P83=FE(23.2=100),PF058526=DUF848=FE(30.6=100)
A:
NA
C2:
PF083176=Spc7=PD(54.1=84.9),PF052626=Borrelia_P83=PD(56.3=93.0),PF058526=DUF848=PD(62.0=77.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGAACAGCTTGCTTGCT
R:
AACAATCGCTCCACCGATCAG
Band lengths:
358-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]