GgaINT0036697 @ galGal3
Intron Retention
Gene
ENSGALG00000005940 | GFI1
Description
NA
Coordinates
chr8:14832782-14832962:+
Coord C1 exon
chr8:14832782-14832875
Coord A exon
chr8:14832876-14832903
Coord C2 exon
chr8:14832904-14832962
Length
28 bp
Sequences
Splice sites
5' ss Seq
TGGGAGACG
5' ss Score
-7.51
3' ss Seq
GCTGGCCCAGATCTGCGCAGGTA
3' ss Score
0.36
Exon sequences
Seq C1 exon
TGCCCGAGGTTCCTTCCCTGGGTGAAGAGCAAGAAAGGCGCACAGCTACCACCAGCCCCCGCTCCGCCCGACGAGGACTACAGCCTGCGGCTGG
Seq A exon
GAGACGGTGCTGGCCCAGATCTGCGCAG
Seq C2 exon
GTAGGAGCTCGCCCTTAGCGGGGCGGCCCCGGAGCCCAGCAGCGGGCGCGGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005940:ENSGALT00000009558:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGAGGTTCCTTCCCT
R:
GCTAAGGGCGAGCTCCTAC
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]