GgaINT0036699 @ galGal4
Intron Retention
Gene
ENSGALG00000005940 | GFI1
Description
growth factor independent 1 transcription repressor [Source:HGNC Symbol;Acc:HGNC:4237]
Coordinates
chr8:13080917-13086056:+
Coord C1 exon
chr8:13080917-13081123
Coord A exon
chr8:13081124-13085643
Coord C2 exon
chr8:13085644-13086056
Length
4520 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ATGGCCTTGTGTTTCCACAGCCT
3' ss Score
8.68
Exon sequences
Seq C1 exon
ACAGCAAGATCCCCGAGGGCGCGGGGCTGTGCCGCACCGTCCTGCCGGACCCGGAGCCGTCGCAGGGGCGCTTCTCCCCGGAGTCCCACCTCACCGAGGCTGCCGATGGCACCTCCGAGTCGGCGCCCAGCTGCGAAGGCAGCATCTGCGACAGGGTGTCTGAGTTCGGAGATTTCTGGAGACCGCCCTCGCCCTCCGTCTCGCCAG
Seq A exon
GTAGGAGCGGAGGAGCAGTGCCCGGCGGGCTCCGGCCGCGCTCCCGTGTCCGTGCGCTCCGGCCGCCGTCTAAAACGAGTGGAAGGACAGATTTGCCTTTTCCCACTCGTTTTCGTGTTGTCTCTCTCGGGTTGCTTTTCCAGCCAGGCTCCCCCGGCTAAGGGAGTCGCATGTTATCGTCAGGCGGTTATGGAAGTCGTATTTTTATTGTCATTTGTTTTTGATTAATTGCCAAAGGCAGCCGATTATATTTTAAATGTCTCGGCATTTTCTTACAGGGTCCTGGTACGTGGGGCCTTAGTGGGTAAATGTATTTTAGGACAGCAAATGTATCTTCTTGGCTATCTATTTACCTGTAGTGAACAGCAGTGACTCTGTGTTTTGGACTGCCTGCTCGATGTTTTCCCAAACTCCCTTTGAGGTTATTGTTGTCTATAAAAAGAAAAGGATCTCTCCCTCTCCCCCCCCCCCCCCTTTTTTTTTCTTTTTCCTTTTTTCTTTTTTCTTTCTTTCTTTCTTTCTTTTCTAAAACTACATTCATAAAAACAACAACAACAACAACAAATTAAAAAAAAACAACAAAACAAACAAATGAAACTAATGACAGTCAGATTTAAACACCCCAGATCCAGGAAACTCACACTTATGGCTGCAGCGCCTGTCTCTAGCTCCCTTGTCCTGCCTTTGATGTGGTTGGAGCAGTGGGAGATGCTGTCCCCAGCCTGGCATGAATACTTATCTCATTTAAAAATACCACGTTGTCGTTTTATAACAAAAATACGTATATACAAAACCTACTTTTTATTGCCTGGGTTAAAAAGTGACAGCTGAAAAAGAACAATTTCTGTCTTAGCAAAGGAAAAATTGTCTCAGCTTTTCACAATGACAGCAGACGCCTGCAAACGAAAACTTGGTCCTATTTCCCCACCGATTTTCTGACTTCATTTTATAGCGTCCTTGCATATCAACAGCTGATTGTAATGATGGGAACTTGCATTTCTAAAGCTCACCAGTCCCTTAAAAAAGCTTCATTTGAACATTCCCCTTTTAGGGGAATGCTGATGTTCAAAATGCTGATGAGCGTTGTTACAGCTACAGAACAGTTTTGGTCTGTGCAAATGACAGACCCGACCTAAGGCAGGAATGCAACAGTCTCTCTTTTGCTAATATTTCTTCACAAAGCATAGCAATGTATAATTTTTATTCTTACAAATTGTTCTCATTCCCCAAATAATACCGTTTTCACAAGATATCTAAAAGGCAGATATAAAATGGAGCAGCTGTTTACCAGGGCTGCTATGCCTTTGCCTCCTCCCCACTCATTTCTTCCCTTGCTGTGGGAATTGTAGCTCCCTGCCGACCATCCGGTTGCCTGGGAAAGGTATCCGCAAAATGACGGTGGCATCCCCAGATGAAGATTTTTCAGAGGAGGGGCACAGTCCTGGAACCGTTTGATTCCATTCACAGCCGATAATTGAAGGTTTGGGACTCCCTGCCCTGGCATGAAAAAGCTTCATTAAACTAACCTCGGTGCATTGAGGGAGGTGCTGTCAAGGACCAAAGCATCAGCAGCAGGGTTAAATAGGTGGGCTTCCTTTCACAACTCTCCCAAATCCCTGCCGTCCAGCTGCCTTGTCAGATTCGGCATGAAACTGGAATTTGTGCCTTAGTCACTTCTGTGAGGTGTGCTGGTGAGATGCTGGGTTTTTGAGATTGTGTTTGTCTGCGTGTTTCTGTGCTTCCACAGGCAGTTCGGATGAGAAATGATGTTTCTAAATCATGCATAGGGCAGGTGCAGTGAGTAGTACTGTCACCTCCTTGTCCCCGGGAGTGAACATGGATGCTTTGTTGTGCAACGAAAGACAGACTTCAGGTCTGTCTTTGAATGCAGTGCTGCCAGTGTAGGAGGGCTGGCACAGACACAGTGCAATACCTTTATAGGGTTAGCATTCTACATACATTGACTGCATCAATGCAGATCACTGTGTTATTTAACCTTACTTTCTACGTATGCCTGTAATCACATGTGTTTGCATATACAGAAGGTGCCTGATAACTGCGCAGCAGTACATAGGTATTGTTTGATGAATCTCTTGGTGCTATAGTCTTGGAGGGAGCCTTTTATTGGGTGTAACAGAGTTGTCACTCAGGGATCATGGTGATTTTTGTTCTATTGGAAGAGGACACTTGAATTAATTCCCAGTCATTTCAGGTAGAGTTCGCCTTGTCATCCAATAAAGAGTGCTGATGTTTCTTCTCCCAGGGGCTGCACAGAACTGCTAGGGATAGAGAGGAGGAAGAGTCTGTCTTTCTCCACCATTCACCCTCTGGAGGGCTGGATGCTGTGGAGCAGAGGAGAGGCAGAGATAGCAGTGTCTTTTGCCATGCAGCGTGGCACAGAAGGTTTGATGCTGGATGTGGGGCTTGGATGCTTTGAGCTTGCCCTTGGGAAGTGTAGCATGAGTGGCTCCCCTGCAATTGTGCCTGCAAGGTCTCTAAAGCATGTGAGGCAATGGAAGGAACACTGCACGCAAACTGATACGTGGTGCAGTGTTTACCGTGTCCAGTGTTGCCACTTCCAAGGGCTTAAAAATTAGGTCAGCCTTTTCTCCCCTATCCCTCAATCGACTGGCTTAGAAATCAAAATTGTAAGAAATACCTTATGGATATTCCATTCTAGTGTTGAAATACCGAGAGTTTACATTTTCATATTTTTTCTTTACAGTCTGGGCTAGTAGTTGACTTTAAGGGGAAAAAAGCAGTTACAAGAGCTAGAAAACAAAAGGAAAGCTGCACGATGAAATCATGCAGTTTCAAGAGCTGGGGCTTTAAGATAGTTTTGAATCTTGCGATAAAATCGTGAGACATGACAACACTGAAACTGGTTGCAAAGACACAAGATAGATGATGTGATGCTGACCACAACTTTGCAGTCAGTGCAGAACAGGAAAAATCATGCTTAGCACCATGTCAGCTAATTTGATTTCATCTCTCTGTTCAAATGTCCCAGTTGATACGTGCACGTATATTCCCAACTGAAATACTAATACTTGAATGGAAAAGCCTGCGTCTATTAACATACGAAGCTACATAAAAGAAATAAGAATTAAAAACTCGATTTCTGATGTATTTTCACTCTTTTCTTTAATCCTCAGTGATCATTTGTCTACCTGAATGGGTAGCCTAATGCTTCCTGCCTCTCTTCCCTATCCCACTCCTGGTTGTCTTTTGCTGAAGGCTGATAAAGCCGTGGGATCTGTGAAGCTGGCAGGAATGAGAAAAACCAAACAATTGTGAGCGTGCAAGTTTTTTGGGTAAGGGAAGCTATTCCAGTAAATAAAGTGGTAGGGGGTACCAATATTTCTGTGAAGGCATCAGCGTTTCAACAGTTAATTTATTAATGCTTTTTTTAGTTCACTACTGTATTTGTCCAGTGGAGACATTTGACTCTCCCTGCCCTGCTGACTTTTGTGAGGAAGAGTGAAAGTAGCACACCTTGGACATAAATCACCACCTCTGGCAGCCACGGTTGGGATCTGGTACCTCATATTCCCTGCATAACTGTGTTTTCTCTATACTCTGAGCGTTCATGCCTTTGTGCACTGATCTCCAAGGCTGTTTTCCTGCCATTACATCAGTCTCTGCTAAAGCAAGTGGGATAGGTCTTATGCCTACCCCCTTGGTCAGATGCTGTTGCCAAAGGTGAGGCTGTTACAGCCAGCTGAAGTCACCTGAGCTTGTCTTGGTGGAAGATAGCTTTGATTATGGCTGATAGGAAAATCTCTTTGTCCTTCAATTTTTAATGCAGTCTATACCAATGTTTTTCATAATGCATTTATGAACTCAGTATTTTCAGTGTCTTTAGACAGAGAAATATGAAAGAACCATGATTTTATTTCAGGCAATTTCAGTGTTGGTTTTTTTTTTTTTTTCCCCCTGAAAAAGTGAGGCATGAAATTCAAGCACTTCAGAAGCTGTTTTCTATTTCAATTATTCTTTTGCCAGTAACAGGCAGTTATGGCATGAAGTTGAGAAACTGGATTTGGGCATTGCACTGTGCAACAAACAATTTTTAGTTCCATTGAGTAGGTATACATCTCAGCACGTTTGCTTCTTCTGGTGAGCATGACCTGCACTAAACTTAAATATTTGGACTGTCAGCTTTAATGCTCAGCTTGGGATATAGTACGTATACTTTTCTGAGGAGCAACAGATAAAACCAAAGGAAGTTGCAGACCGAGTTGTTTAGTATCTCAACAGTCAGATCAGTATGTATGCACCTGGGCACCCAAAGACGGAGGTAGACAAAACTGGTGTGGTGGTTGCTTTAAATTGTTTGATTGGGGTAGCAGGTGAGGAGTTAGCACTGGATGTACCGACCCTACTGAACAATATAAAATGTATAAAAAGCAGTTTAGGCTCTGATTCTGGCCCAAGCCTGGGTACTGAGCCAATTCTGCCTCATGATGGTGGCTGGACTGTAAAAGTACACTAATTCCCATGGCCTTGTGTTTCCACAG
Seq C2 exon
CCTCAGAGCGATCTGTGTGTCCATCCCTGGATGAAGCACCTCCCTTCTCGGTGCCCTTCAAACCATACACATGGAGCAGCCTGGGAGGCTCTGAGCTGAGGCACCTCGTGCAAAGCTACCGGCCCTGCCCAACACTGGAGCGAACTTCAGCCTTGAGGCTCTTCTGCGAGCGGGGCTCCGAGCCCACCCTCTATGGTGCAGAGTGTAGCTCTTCCCTTGGACTTTATGGTGATTTTGGCTCCCCAGGCCCAGGGCTGTTTGAGCGGCCTCCAGCAGCACCCGGACTCTATACTGAGACACAGACTGGGCTGCAGCAGGAGAAGGGACCTGGTGGCCTCAAAGTGGAGTCCGACCTCTTGTGCCGCCCTTTGCTCATTAGTGCTGGCTCTTACAAGTGTGTCAAGTGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005940:ENSGALT00000009558:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]