GgaINT0038285 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6334995-6336668:-
Coord C1 exon
chr8:6336479-6336668
Coord A exon
chr8:6335216-6336478
Coord C2 exon
chr8:6334995-6335215
Length
1263 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TTTCTTGTTTTCTCTGTCAGTTT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GGTTGGAGTCTTTCAATGGAAGTTCTCACCACATTCCTGTGGCAGAAGATAAAATTCCGTCTGAATTAGAGTGGGGATCCCAACAAGCAAAGAAGTCCATATCAAGTAGCAGACTGTCTAGTAAAGACTACGAGCAGAACACGGATACTGACAACACAATAGAAAATTTGTCTGGACACTCCATGTTGAG
Seq A exon
GTAACATGAACTTACAAGACTGTATGCGAATATAAGTAAGGTGGCTTACGTTGTAGCAGGCTATCAAAAATGATTATGTTTCTAGGTATGTAAAAAGAAAGTAATATAAATGTACAAATGTTAGTAAGGTGAACATGCAGTAACCTTTTCCTGTATTCTAAAAATTACGGAAGCCCAAAGTTGATAGCTGTCATAAGTGAAAATGGAAAACAGTGATTTCTACCTTCCCCTGAACCCCTCAAATGCCCCTGTTTTTATAAGAAAAATTGACCAGTATTATGCTCTTTTAGTACCTTAAGCATTGAAATACAATTTTATTTTCCTTTCCAACAAGTGCTCTTTTATGAAGAGGGGAAAAAAGTACATTGTCAATCTATATAGTTATCTTGCTCATTATAGCATGAAACAGATGTTTTTGGCTAGATCTGTGTATGATAATAATGCTCGTAAGCCTATCCAGCTCTGTGAGGTGATGCTTTTAACGAGTGAACTGCACCTCGGGAAAGAGTATAAAGTAAGGAAAAAAAATTAATAATTTTCCTCTTTGGCTGGCTATGAATGCAGCTTATTGGCTAATTGTGCACTGAAAACAGTTATGAAATACACTCAGTGTATTTTTCGCTGCATGTTTTTCTAAAAAGCAACAAATAATGGTTTTACCCTCACTGTGTGGTTATGGAATGGTTCTGAGGTATTAACTTACGCTAATGGCTTTCACTTATATTTAGTATTTGGTTTGAAAGGTCCTTTGCCCTCTTAAGATGTGCCAAACATGCACAGCTGAACATCTCTTTGCCCTCTTAAGATGTGCCAAGCATGCACAGCTGAACCTCTTCCTAAGGGATTTAAGCATCTGCAGTTGGTCCTTCTTGGCGTCATAAAATAGGGATAATATATTTAAGAAGTGTCCGCATCCTCTTCTGTATGTTTCTTTCTTGCCCTTGTTTTAATGATCATCACAGATTTTGTTACAGTTGGATCAGAATATGTAGATACTGAGTTATTTGTTTTTGGATGTATGCTGAGTACTTGAGAGAAGATACTGTGCTGTAGCAACTTCGCTCTAAATTGGAATGTAGGTACATAACCCATTTCATGAAGTCATTTCATAAAGACTAGGCCTGTGCAAACTGTAAAAGAATAGGCCCTCTACAGAGATCTGTTCAGTCTGTATAGATGAAAGAGCTGAGTTGCTGCTTCTTTTGTTATCTTATCTAATGGCTGGAATTAAGACAATACTTTCTTTCTTGTTTTCTCTGTCAG
Seq C2 exon
TTTCTCAGACAAGGGAAGATCTCAGAAGACGCCGACTTCTTCCCCATCTCCAGGTTCCCAAAAAATTATGCAGTTTGATTCTGTAGTCAATACAGCAGAGAGAGCGAAGTCACCTTCTGGCTTTTCTGGAAGCGCAGCATCAGGGCAGAAGCCCAACCTAGCTTTCTCTGACTTGAGTCTGGGAACTAGTAGGCCTGCAGCAGGAGTAGCCTCAGCGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.787
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTCTCACCACATTCCTGT
R:
GTCAGAGAAAGCTAGGTTGGGC
Band lengths:
345-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]