GgaINT0038298 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6320426-6322237:-
Coord C1 exon
chr8:6322038-6322237
Coord A exon
chr8:6320638-6322037
Coord C2 exon
chr8:6320426-6320637
Length
1400 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
CTCTCGTTATTCAATCTCAGAAA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GTTCCTAACTAAACGAGAACAGAAGCTGATGCAGCGTCGACAGCATGCTGAAGAATTGCTGGAGTGGAAACGCCGCCTGGATGCAGAGGAAGCAGAAATACGGCAGATAGAAAAGCAGGCTTTGGCTGCCTGGGACAAAGAGCTGCTTAAAACCAAAGTAGCCAAGAAAGAACTGGGGGATCTGAGAACTGAGCCAAAAG
Seq A exon
GTAGTGGAAACTTGGGGAGGAACTTACGCATATAACGCAAGTGAAACATAATCTGGCAGAATGGTTGCTTAATGGTTGCATTTCTTTTATTCTGTGATCTTGTGGTGGTTCTTTTCTCAGTTTCTGCAGTTTGTAACTTTCAGTTACAGCCCTGTTCTTTTTATCCCTATTTTAAACCTGGGTCATACATGAATTCCAGTTTTGCTGTATATCTTCTCATGTGTTTCTGCATACAATTTGATATCCATTCAGTTTTTCAAAACAAAAATATTATATGATCTTTTGCTGATATTATCCTGAACGTACCCCTGTTAAGTAAATGTTTGAAGTCTGCAACAGTACTGAAGTATGCTAGGATGTAGTTAGTATAAATTACACTATTCTGAGAGAAGAAGTTCTCAAATTTTAGGGGCTTTGGTTTTATCACTCTGTCTTAATTCGAACGTACTTTGAGCATGAACCACAGAAAATTGTATTACAATGGGAGAAAGTAATGAAACTTCAGGGACTGTTCTCAAAATAATACTTTTTCCCCTCATTGTTGAAAGTGCGAGATAGGTTCACTGAAGGTACAAAGGGAATTTACAATTATGTCCTATTACACTTGCCACTGAAAAACCTCGTGGATCTTAGGCATCTGGAAAAACACTTTAAAGATGTTATGTGTGCAAGTCACTAAGTTCCAGCGAGGAAAAATTCAGCATGCTGAAGACAGAGGCATGGATGAAAAAACACATTTACTTTCTGTTAATTGTGTCTACCAGTAAGCACTGGAGCACGGCCCTGCTTCAGAAGAAGTTCCTCTCCCTAGCTTCTGCTCAAATATTAAATAGTTCTTCATGGCTGCTTCCATAATGCTGTGACTCCTGCGGAATTTAGTAAACAGGAATATTGAAAACCCAACTTATTATTTTACTTGTTGCCATTTGAGAGACTCATGATGAAATCATAACATTAAAATGTTCTCTGCAGCGACTGTAAAGGAAGCAATCAATTCTAAATTCAAGATCTGACTTGTAGATTATGTGCTCCACCGTGACTTCTTCAGACTAATAGTGACTCTTGCTGTTGCATGGCTAACTGGAAGGACAGGTTTCCCTAATAATCTTTCTGGAGTATGTTGTCTGGAAAATGTTAGAATATTCTGAGGAGTTTTTTTTGTTTTGACATTTGGCAATCACTAGGACTGTTTGGTAGTCTTAAATCATAGTTCTCTGGTAAACATTCCTTTTTCATACTAAGTATTTCAGAGTCAATGTCTAGATAAATGAAATAATGCATACCCAGTTGACTTATATTGATAGCAGTTACTACTTTATATGAAGACGATAGTTACTCTGAAGGCATCTAAGCCAGTGAAGTTCTTATGTTGTTTCTTTTCTCTCGTTATTCAATCTCAG
Seq C2 exon
AAACAGCCAGTGAAGAAGAGTCTCCAGTGCCTTCTTGCTCTCGTCTGAACAGTGAAAGCTCAGTCCCAGAAGAGCTTGGCAGTCCAGCTGCTGAGTCTGTCCCATCAGAGACTATGGGCCGTGGACAGCCAGAAAGCCCAGATCAGAGTACAATTAACGAAGAAATGACTTATTCTGAAGACTTCAAGTCCTCTACCTCACCTGGCAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGCTGGAGTGGAAACGC
R:
GCCAGGTGAGGTAGAGGACTT
Band lengths:
354-1754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]