GgaINT0038646 @ galGal4
Intron Retention
Gene
ENSGALG00000003399 | SELE
Description
selectin E [Source:HGNC Symbol;Acc:HGNC:10718]
Coordinates
chr8:5102552-5102707:+
Coord C1 exon
chr8:5102552-5102573
Coord A exon
chr8:5102574-5102682
Coord C2 exon
chr8:5102683-5102707
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCTCATTTCTGTTCTTATAGCAG
3' ss Score
7.56
Exon sequences
Seq C1 exon
CAAAGAAATTCACTCCTGCCAG
Seq A exon
GTAAGCTGTCCCTCAAAAAACAGCATGAAAAGCATTGCAATCACTTTGCTAAAATCCACTAGGTATAGAACAGTTGTCACTAAAGTACTTCTCATTTCTGTTCTTATAG
Seq C2 exon
CAGCTGTCAGCACCTCACTACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003399:ENSGALT00000005376:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]