GgaINT0038702 @ galGal3
Intron Retention
Gene
ENSGALG00000002922 | NOTCH2
Description
NA
Coordinates
chr8:4248472-4250974:+
Coord C1 exon
chr8:4248472-4248604
Coord A exon
chr8:4248605-4250728
Coord C2 exon
chr8:4250729-4250974
Length
2124 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGA
5' ss Score
5.41
3' ss Seq
CACTTCTACTGTTTTGACAGGTC
3' ss Score
7.72
Exon sequences
Seq C1 exon
TGTGTGCCTGGATACCAGGGTGTCAACTGTGAATACGAAGTGGATGAGTGCCAGTTTCAGCCCTGCCAGAATGGAGGAACGTGCATAGACCTTGTCAACCATTTCAGGTGTTCCTGTCCACCGGGCACTCGGG
Seq A exon
GTATGAAACTCAGCAATTAAGTGAATGTTACAAGAATAAACTTTCCTTTCTGACTTGTTTCCTAACGCAGGGTCTAAAGGGAATCCATTTTCTTTGAAGAATGTTCCCAAAGTGCACTGAATCCCTTGAGAACGCATATTTTCCCTTTAAAAATAAATATGTAAATTTGTTAGGCTATGGGATCTCTGTCTTTCTGAGCTGGTTTTTGTTGGTTTTGTTGTTTTGTTTCCTTTCTTTTAAAGGAATGGGTCATGACAGTGCTCTCTGGGAATAGATGACCCCTCTTTGGCAATGGGGATGGAATGGATTGCTATTAAGATGTCTCCCAACTTTATCTGTTTTGTTCCAGAAAATCCAAGGTTTCTTCTTAGCTGAGAAACCGTGATATATACAAAAGGTTGCTTAGTTCTTGCGTTGTTTCCAGCACCCTCGTTTAAATGTTGGCCCTGCGCTGTGCTCTATCCTGGAACCATTTGTGAAAAAGAAGTTCAACGTTTAAACTATTTCAGCAAATTGGAGCTCTTTTAATAGCAGCTCCTAAAAATAAATTAAAAAAAAAAAAAAAATCCAGCTACACAGTGGTGATTTTTAGCAAATCTGATTCCACAGCTTGTTCAACATAATGCTTCTTGAAGGATCACCTTACATTTCCTAGTTGTGTGTGGCCTGATGGTCTTGCTTTCTACCTTCGGAAGTATTGCAGAGAGCACATCTGTACTCATCAGTAAATGTTTGCTAACTTGATTGCTTTTCTCTGAACCTTGCTTCTGAAATCAGTTCAAAGATTTTCTGTTCTTCTGAACTTACTTTTTCTTTCTGAAGTCTCACCTCAATGTAGGCAAAACCATAGTAGGCAAATCATGTAGGCAAAAATCTCCTAACGCGTATTAGATAGAACTAAATTCTTATATTGATACCCTAAGTAAACTTAGTCTAAAATATCTGCCTCCAGCACATGCATATTGCATTCATTGAGTTGAATGTGGCTGTCAGCACATCTCCCCAGTCTGCATAAGTACTTACTTCATTCCAAATCGTGTTTAACAGTTCCTCGTGTTGTGTTATTAATTTGGACCTCCATTTTAAAGGGGTAAAAAAGAACAACCAAAGTTTGTTGCATCTCTACATCAAAGTACGTATTTATGTACTAATTCCTGTGTTGCTAGAATTAGTGATGTACAAAGGGACACCCCTCACCTGTGAAAGATTCTGCATGGTTCAGAATGGGCTTCTAATTCCTCAGTCTTTATTCATTGGGATGAATTACTTTTTGGATGTGACTTGTTTTCCTTTCCTAAATGAAAGGAATTAGAATTGACTGGTATCATTACTTAACGGTACCAAGACGTAGCTTTTGTCCCTAGTCTGGTTTGAAACAAATGCTTTACTGATGCCTGTATCAATATCTTCCTTGTGTAGGTGAATCACTGCACGTGCTGAGGATGAATCGACTATATTAACAGACAAAACTCTTTGCTCAACTTATCCTCTCTGCTCCCTTATATCCATTACACTGTGTGACTAAGGCAGAACTAGCACCAGGCCTTTTCTTTGGACAGGGAACCCGGTACAGGGAGGGAGAAGCTGGCATTCCTAGCAGCATTGGTAGTTTACTGCAGGTCCTCAGAAGTCAAGCTGCAGGAATGGCATGCTGGCCAGGGGTCTGTGTTCTATCACAGTTGCTTTTCAGTTGGTTTGTTGTGTCTTGTTCTGATGGTGTTGTTGAATTTCAGGGTTACAGCCAAGTTAACTGAATGGTTGGAAGCTTCCAGCCTTGCTAGGGACAGCACAGGGCTCTCTATGTTCAGTTATAGGGCTAAATGGAGTGTTTCTTTCATTTTTGTTTTGGTTTTATGCTTTTAATTATGTCCCTAAATTAAGTCAAGCATGAAAGCTGCTAAATACCAGTATGACATGCCATTGAGAGCAGACTGGATCGAAACCACACGCTTCTTAAGTCTGCTCTGAGGCTCACTGTCTGCAGCGGGCATGGCTTGCATTAAGTTGGGATCTTTACCTGGTTATATCTCAGACTGTGTTTCACGTAGTCTCAAAACTTGAACGCCGTAGGAAATGAGGCCGTGACACCCTGTTCTCAGACCGCCACTTCTACTGTTTTGACAG
Seq C2 exon
GTCGTCTGTGTGAGGAGAACGTGGATGACTGCATTTCAGAGTCAGGAGGACCCCGCTGCTTTAATGGGGGGCAGTGCATTGACCAGATTGGGGGCTACAGCTGCCTTTGTCTCCCAGGCTTCGCAGGCGAGCGGTGCGAGGGGGATATCAATGAATGCCTCTCTAATCCTTGTAACCCTCGTGGAAGTCTGGATTGCATTCAGCTGATAAATGATTACACATGTATCTGTCGTAGTGCTTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922:ENSGALT00000039988:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(25.8=17.8),PF0000822=EGF=PU(90.9=66.7)
A:
NA
C2:
PF0000822=EGF=PD(6.1=2.4),PF0000822=EGF=WD(100=42.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]