GgaINT0039018 @ galGal4
Intron Retention
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4046402-4049200:-
Coord C1 exon
chr8:4049176-4049200
Coord A exon
chr8:4046429-4049175
Coord C2 exon
chr8:4046402-4046428
Length
2747 bp
Sequences
Splice sites
5' ss Seq
AAAATAAAT
5' ss Score
-4.12
3' ss Seq
TTCTTTCACTTCATTCAAAGCAT
3' ss Score
5.46
Exon sequences
Seq C1 exon
CACTATCTATAGTTTTTGCTTTAAA
Seq A exon
ATAAATAAATAAGGAGTGCCACAATACTTAATACAGTTTGAAGGATTGATCCTGCTACCCTAGCTTGGCCTCCTTTTCATGTATGCATTGACTTTATTATCTTACAGAGCACTGTGTTAATTTCTGCTGCCATGTACTCTGTCGAGATGGGACGTGTGGGACAGCTGAGCAGAGATGGAAGTTTATTTCTAAACAAAAACTTACTGTCACGACTGTTCTATTACAGAAGCAGTTTGAGAGTACCGACATGTATAGTTGTGTGTATAGTTTGTATGTTTACCCACGTAAACCTGTAAGGGTTGCAAGGACATTCAATTCAAAAACAAATCCACAATGACAAAAGAAAGAACAGAAGCTGCTGTAGATGTGTGTGTTCTGAACTTGGGAAGAGAATGGTGCATTCCTCAGCTTTCAGGAGGAGTATCCATCCCGTTTCTGGGGGAGAAACAGAACAACGTATCACATGAAGTTGGGCACGTTATTTAGGGTCCTTGCAACCTGTTTGATTTCACTGTAGTTGCCCATGAGGGTTACATTTACATTCACTACACCTTCCTCTGCCAGTTCAGCATCTCTCCCATCTCATCCTTGCTAGGTAATGGAAGCAGCATTAATTAAAATGGTGCCAAAACAAACATGTTGAAAGCGTGGGGAGGATGTAAGCAGGCACAGTTAATAAATTGATTGTGATCGTAAATAATGGAGTATGTGAGATGTACAGCTCAGATTGCTAAAATTTAGCAAGAAGTATGGGCAGCCTTATCAGTCCTTCTGTTTCCAGGCTCTCCTGTGGGCACAGAGATAAGGAAAAAATGACCAATCCAATCTGGGCACATCAGAATTGTGATTTGGCTGCCGAGTACCTTTGTCTTCTAACGTGCTTCATAATAGATGTATGAATAGACTGTGATGTGTATATAGTATGGATCTGGCTGGGCTGTGTGGGGGTTCATTAAGTCTGGTATTTAGTTGTGACAATGAATGTAGTGTCTGCAGGTGTTCCCAGCACTGTACGCTGTTGGGGAAAAAGGCATCAAAACCAACCCCATTTTGATAAATACAAATATTTTCTGTTCTGTATTCAAGTCCAGATAAATCCCTCTATTGCACTAGTATAACTGTACAGTGGGAAAAGTCACGTGGCATTGAGTTGAGATTTAGCTGTGCTGCAGAACTGTGGCAGCAGGCAAAGCTTTTCTGCTATCTCTTCAGTGCAGCACTATTCATTTTATCCAAGAATACTGAAGCTTAATAGGAGCTTCGCCGTGAACAACATGACTATTGATTCCTTGGTCTGCATCTCACTTGACTAGATTTAGCACAGGAAGCAGGTAGGAATGATTCAAAGACATGCACGTCTGAGGCTGAAAATGAAAAACCTTCCTTTCAACTCTCATAAATGCCCTTTCAGCCTGCAAAGACTGATTTCTTGTAGTGATACAAAATGAAGGGTTTCTTTAACATAAACAAACAATTCACTGTTCATTTCCATATCTGTTTGAACGATAGAAAGAATATTCTCTGCAATAATCCCAGCAATAGAGTTTCTGGGGCTCCTTCTTACTGTAAACTTTAGTAACTACAGTTTTTCCTTCTGGTGCAGGATAAGATTTCTGCTCGATGACTTCCACTTACACAGATGTGCTGTTGTGTGGATTCTGTTCTTCAGGGGAGAGAAGAGAGTAAAATCGTGCTTTTTGGGTAGCAGTGATGTAGTGGAATACAATGTTGTGGATGTTGGGATTCTAGTAGAGATACTCAAGGCTGTCACTGACTTTGAGTTCGTTTCCATAAAGTCTCCCGTTGCCTCATTTTGATGCATTTGCAGTAGATGTACGTATCTGCTTCGCTGATCTTTTAACTGCCTTTGTTCAGCTGATTAATGGAGCTTTCTGACTGCAGACATTCCTGGATTCGCAGTGTTAGGTGAAGATGCCTTCATTTTAGGCCTGCTCTAGAGATCAGTGCAGTGAGAGAACCAAATAATGGGAAAATGTGTGTACTTTGTAGTACAGTTTCTCTCCGTGCAGGAAGGAAAGAGGTGGGATTGTGAAAGGAACGTTGTTAAGTTATATCTTTAATAGAAAACTATGCTCTTATGCTTCAACTGTACAATCCATCAGACATTGGGAAATCTGAGTGATGCAGTATTTTCTCAGAGCTCTTTATAAGGAGGAGAAACAAGTAGGAAGCAGCTCGTTCTGTAGTTGGTGATTGGAAATGGGTACCTGATGCGTGCAACCGGATCCTGGGATTTGATCTGTGATCTTACTATTTTTATCACATGATATCAGGCTTGTCCAGGCTGTCCCATAAATCTTTCAGCCTTATAATGGCTTCCATACATTGCTGGCACTTTCTATTCATAAGCCTCTTTAATCACCTCGCAAATTATTCTCGGGAATTTCTCTGCCTGATTGTGAAATGAACCTGCTTCACCAGGAGGAGTCTATTTAATGTTCTTGCCCAAAGACTTTGTAGTGCTTTAAGGTAGGATATTGCACGCAGACTGAATTACAGGCAGAACCTGAGAGAAGGGAACCGCGCTCCGTATCTCATTGTTTATTCCTCAAGCCACAATTGGATGCTGTGACTGTATTTTCTCCCTATAGTTTCTTCTGTAATTAAGTAATTATTTCTAACAGCAGGAACGGGACCTCCTGTCCTCCCTCCCAACCACCCACCCTGGCTGGCTCCAGTTACGTGCTTTCCATCTTGCAGCAACACTTCTTTCACTTCATTCAAAG
Seq C2 exon
CATTGGTCCCGGTTGTGAAACCACGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803:ENSGALT00000004434:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(5.0=100)
A:
NA
C2:
PF0142613=BAH=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]