GgaINT0039129 @ galGal3
Intron Retention
Gene
ENSGALG00000008951 | FAM73A
Description
NA
Coordinates
chr8:19650635-19651136:-
Coord C1 exon
chr8:19651064-19651136
Coord A exon
chr8:19650722-19651063
Coord C2 exon
chr8:19650635-19650721
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTTCTAAAACCTTTTCTAGATA
3' ss Score
6.98
Exon sequences
Seq C1 exon
GACTGAAATGTTTGAATGTCTCGGAGACAGTGACTTCCTTGCTAAGCTCCATTGTATTCGACAAGCTTTCCAG
Seq A exon
GTATGCAGAAAGCGAAGTGATCTGTCTTCTTAAGCCTAAGACATGTGACATTGAAGTGCCACTATCAGTGCAGTACTTATGCCAATGTTTTAATAATATATCCCACAATTAAGCATATTCTTAATTATTCCTATAATCTCTACATTTCTGTAATTCTGAAATGGGGCATCCCAATCTTGTGATCAACAAAAATTTGGAATATTTGCACCTAAGACTTCTTGGGAACTTGCCTACTAGACTAGTGGTTATAAGGAAGAAAACTTTATTAAATTTGATTGAAGTAAAGATCACTTGCTATACTCTGTAAATGAATATGCCTATATTTTCTAAAACCTTTTCTAG
Seq C2 exon
ATAATTCTTTCAGAAACAGCAAACAGAATATTTCTTGCTGAAAGTGGAAGAAAAATTTTATCTGCCCTAATTGTGAGAGCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951:ENSGALT00000014556:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(4.4=100)
A:
NA
C2:
PF102654=DUF2217=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]