GgaINT0039183 @ galGal3
Intron Retention
Gene
ENSGALG00000011413 | E1BVV4_CHICK
Description
NA
Coordinates
chr8:27486933-27488186:-
Coord C1 exon
chr8:27487999-27488186
Coord A exon
chr8:27487072-27487998
Coord C2 exon
chr8:27486933-27487071
Length
927 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
CATTTCCCCCACCCTTGCAGGGT
3' ss Score
9.24
Exon sequences
Seq C1 exon
AGAAAGTGCAGCTTGAAATTGATGCTGTGATTGGCCAGTGCCGCCAGCCCACCATGGAGGACAAGGAGCACATGCCCTACACCAGCGCAGTGCTGAGCGAGGTGCTGCGAATGGGCAACATTGTGCCGTTGGGAGTGCCCAGGATGTCCACCAATGACACAACCCTGGCTGGCTTCCACGTGCCCAAG
Seq A exon
GTGTGCCCAGGACACAGCCCTCCCCTCACCCTGCCAGCACAGGGTCTCCAAAGCCCACATCCCAAACCTCACCTGGAGGCACCAACCTGCAGCACCTTATGGCATCTCTCAGCTGTAGAGAATGCAAGTAATCCTGACAGATGCTGTAGGGTTGCTTGGATCTCACCTCCATATGGAAGAGAACTGTAAGATTCTGTTTAGTTGGTCATCACTTTAGTTTTTTCAAGGCTTATCTCTCAAGTTTTGCAGATAATGACTTCCATGCATTTTGGGAGCAGAGGTCCAAGAAACACAGGAAAGCAAACAGTTTGTATTTGTTAATTCCACAGAGTATTAAAGAACATCTATTAAAAGTAGCCCTCGGTAAATGCCGAGTAATAGTTACTGATGTATGTATGTTGTTCTGACATCATGAAAGCAAATATGAGATTTGGATAGATTAAGTCTCTTGTATAGATATGATCAGTTGCTTCTTGGCAAATTAAAACTAAAAGTTCTGGGTGTTTTGCTGCACATTGATTTGAACACTTTTTTTTTTCCTTCTCCTAATGGAAGGTAGGAAGGTAAACCAGATACAGTTTTAATAAAAGGTAAAGTAAAGCAGACTGATTGAAAATCACTTGGTTAAGTTGTTTTTAATCCTTATGATAAGATGACTTTATTAATTAAGAGTCAATTGATATTAACATCACCAGTCACAACAGCACCAAGGTATGGATCAACAGAGTGGAGATACAGTGGCACATCAAAGTGAACAATCCTGTAGGCTTTTGCCCTCATTTAACCATGTTGTTTGGGGAAAATATTTTGTGTATTAAAAAATAAAAGAAGTAGCTTGCTTCATGCGTGTAGAGAAGAGCTAATACTAACCCAGTCTTGCAGCATGTTGGCTCTTCATGCAACCTCTCATTTCCCCCACCCTTGCAG
Seq C2 exon
GGTACCACGCTGATGACCAGCCTGACTTCAATAATGTTTGACAAAAATGTGTGGGAGACTCCAGACACCTTTAATCCTGAACACTTCCTGGAGAACGGCCAGTACAGGAGGCGGGAGGCTTTCCTGCCCTTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413:ENSGALT00000018621:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGTGCAGCTTGAAATTGATGC
R:
TGCAGAGAAGGGCAGGAAAGC
Band lengths:
326-1253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]