GgaINT0039199 @ galGal4
Intron Retention
Gene
ENSGALG00000005069 | heme
Description
Prostaglandin G/H synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:P27607]
Coordinates
chr8:9810426-9811661:+
Coord C1 exon
chr8:9810426-9810988
Coord A exon
chr8:9810989-9811544
Coord C2 exon
chr8:9811545-9811661
Length
556 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AGTGTTTGATTTCATTCCAGCCA
3' ss Score
4.61
Exon sequences
Seq C1 exon
CATCCGTCTGCTGCACCACGCTCTGCGACGGGCTGTGCTTCGCGTGAGGAAACGCACTTCACCCAGTAAAACTGCTGAGATGACCTCATTAAAAGCGAGTGAGCCACGATCCACGCCTGGATCAGCGGGGGGTCAGCAGCGTCCAGCGGGGGGAGCCCGGCGCACACGATCCCGTGGCGGCCCGCTCACAGCGCTGCGCGGTGCTGAGCGCCCCCGCGCCAACCCCACCGCGCCGCACCCGAACCAGACTGAACAGAAAGCAGCGAAGCGCGCCCCGAGCCCGGGGGTGGCCCACAGCAGGTGGGAGCGGGGGCCGGGCCGGGGCGGGGCAAGGCACGCGAAATCCCCCACCCCTTTCGTTAGTTTCCGGCCGGAGGTGGGGGGAGGCGGGTGACTCACGGCGGGATGTATAAATGAGGGTAAGTACCTGGCTGCAGTACGATTTCTGCGATTTCGAGCGCATTTGGAATTTCAGTAGTTGCGAGGAAAGCGTAAAGAAGCCCGCCGGGATATGCTGCTGCCTTGTGCACTGCTGGCCGCTCTCCTTGCTGCCGGCCACGCAG
Seq A exon
GTAAGCGTGGGGCGCGCTGGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGTCCCGGTGCTGCGCGGCTGCGGCGCGGGGGGCCCGCGGCGATGCTCACAGCCGGGGCGTAGGTGTTCTGTTTTACGTACCTCGTGACTCCGAAGTCAGTGCAGCAGGAGAGCTGTCAGATCCCCTCTGCGTTCGGAGCTGGTTCGTTGCAGCCCGCAAACAGCGCGCTTCCCAGTTCGTGTCACTGATATTGCCGGGAGCTGCCCGAAGTCTCGTGCAAGTGGAACTCGTTCTGCTGCCTGCACTGTGAGCACTGATGCACCTAAGATGTTAACGCAGTGCAATGGCAGTACTGATCCAGTAAAGAAGACACCCCTTTAACTAGAGTGTTTGATTTCATTCCAG
Seq C2 exon
CCAACCCTTGCTGCTCCCTCCCATGTCAGAACAGAGGTGTATGCATGACAACAGGATTTGATCGGTATGAATGTGACTGCACGAGGACGGGCTATTATGGGGAAAACTGTACAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005069:ENSGALT00000044290:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGAACCAGACTGAACAGA
R:
TTCTGACATGGGAGGGAGCAG
Band lengths:
358-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]