GgaINT0039207 @ galGal4
Intron Retention
Gene
ENSGALG00000005069 | heme
Description
Prostaglandin G/H synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:P27607]
Coordinates
chr8:9815841-9816239:+
Coord C1 exon
chr8:9815841-9815988
Coord A exon
chr8:9815989-9816143
Coord C2 exon
chr8:9816144-9816239
Length
155 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTATTCATTAATAATTACAGGAG
3' ss Score
4.62
Exon sequences
Seq C1 exon
GTTGCTGGTGGGAAAAATGTTCCAGCTGCAGTACAGAAAGTAGCAAAGGCTTCAATTGACCAAAGCAGACAAATGAGATACCAGTCTTTGAATGAGTACAGGAAACGCTTCATGTTGAAACCATTCAAATCATTTGAAGAACTTACAG
Seq A exon
GTAACTTTTTTTTTAATCTTTCTTTATAAACAAGTTCCATTTTGCCTTTAAGTGGGTAATAGAAGCTTGCAATGCGATTTCTGAACTTCAGCAGGATATTGTTGCTGTTAAAACAGGACTTTTCACTTACTGTTCTTATTCATTAATAATTACAG
Seq C2 exon
GAGAAAAAGAAATGGCTGCTGAACTAGAAGAGCTTTATGGAGACATAGATGCTATGGAACTGTATCCAGGCCTTCTTGTAGAAAAGCCAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005069:ENSGALT00000044290:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(13.5=100)
A:
NA
C2:
PF0309810=An_peroxidase=PD(26.6=71.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGGTGGGAAAAATGTTC
R:
CTGGTCTTGGCTTTTCTACAAGA
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]