GgaINT0039281 @ galGal3
Intron Retention
Gene
ENSGALG00000020687 | E1C120_CHICK
Description
NA
Coordinates
chr8:22597379-22599895:+
Coord C1 exon
chr8:22597379-22597450
Coord A exon
chr8:22597451-22599881
Coord C2 exon
chr8:22599882-22599895
Length
2431 bp
Sequences
Splice sites
5' ss Seq
CATGACACC
5' ss Score
-14.91
3' ss Seq
NNNNNNNNNNNNNNAGTCGGGAC
3' ss Score
0
Exon sequences
Seq C1 exon
GATGAGACCGGAGCTGGCCTGTCTGATGAGGACCTGCGTGCTGAAGTGGACACGTTCATGTTTGAGGGGCAT
Seq A exon
GACACCACAGCCAGTGGGCTCTCATGGGTCCTGTACTGCCTGGCGTCACACCCCGAGCACCAGGCACGGTGCAGGGAGGAGATCNNNNNNNNNNCTCTTCCCTTTCTTAGCTTTTGGGTCACCGGTTCCTTATGGTCCCAGAAGGAAAGAAGATCCAAAGTAATTTTGCAGTATTTATGGTTTCTCTTAGGATACCCTATGGGAAACATTGAGCAAGAGTTCCTATATTTTATGCTGAAAAAACACAGTGGGACAGAAATCATGAGATGCGGGAAAAGCCTTGATTGGGAGCTTGCATCCTAGGCACTACAGTCATATATTCTGGAGAGATAAAGAAAAAAGAGACTGGGGGAAGCCTGGTGCCAGCACACATTGCTCTGGCTGCTGGTTCCCTTCTCCGGAGTTTTGACAGCAACTAAGAGATCCTCTTCACTTCTCCATTCCTTCAGGACACATCCCATACTAAGCACTTCCTTAATGGGAGGGTGAGTGCAGAACTGTCTTTTGCATTCTCTTTTTTCTCCTTTGCCCACTAGGATAAGTGGGAAAAGCTGATCACAAATGGGAAATCGGTGGAGCTCTTTGAGCACGTCAGCTTGATGACTCTCGACAGCATCATGAAATGTGCCTTCAGCTACCACAGCAACTGCCAGACCGACAGGTCAGTGTCCAATCCCTGGCTGAAAGTTTGCAGCTCAGAGAGAAAGCAGGCAAACTGCTTGTCAAAACACACCCGAATTTAGGCTTTGACGTAAATAAACCTGACTCAAACTGCAGGGTCTGTTGGGCAAGCACTTCCTCAGTAGTAATGCAGCAGCCTGCTAACAGAAGGCTTACAGAGTACTTCCTGATGCCATTATCCCTTAATACTTGGTTAGTCACTACGGATGAACCCCAGTGAGGCTGGGGACAGAGCAGACTCCAGGCTGGTACATAATGCCCTCCCAGCATATGCAGCAGTGTGAATCCCATCCCTTCTTTCCAGGCAAAACACCTACATCCAGGCTGTCTATGACCTGTGCCGCATGGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCGG
Seq C2 exon
GACACCATTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020687:ENSGALT00000017043:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(2.6=80.0)
A:
NA
C2:
PF0006717=p450=FE(2.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]