GgaINT0039367 @ galGal3
Intron Retention
Gene
ENSGALG00000010911 | F1NT95_CHICK
Description
NA
Coordinates
chr8:27483118-27483805:-
Coord C1 exon
chr8:27483541-27483805
Coord A exon
chr8:27483320-27483540
Coord C2 exon
chr8:27483118-27483319
Length
221 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTCTGCATTTGTGCCCACAGCTG
3' ss Score
10.17
Exon sequences
Seq C1 exon
GGAGAAGAAGGAGAAGGGAAGGGACGGCAGGGGGGCCGGGAGCGGGGCCGGTGTCAGCGCCGGGGCAGGGCGCGCTCATGCCAGCGCAGCGCTCAGCGCCGCCTGCGCCCTGCCAGCACCGCCCCGTGGCAGCGGACCCTCGCCCCGTGAGTCAGAGGCGCTGTGGGAGCTCCGTGCAGCCTTATCTCGCGTCCCTTTTGTGGCCCGGCGCTGTGTGCGGCTCTGCGCGGCGGGGAGGCGGTGGCAGCGAGCGGGGAGCGTCACG
Seq A exon
GTGAGCGACGTGCGGGAGCTGCCGGGCTGTGGGAAGGCAGCGGTGGGAGATGGGAGCGGAGCGGGGAGCTGCCGGTGCGCTGATGGTGGGCTGTTGTTGACGAGATGAGAGGTGCGTGGGTCGCATCGAGAAGGGCTTTAGCAAACAGGTGTGCCTAAGGCCGAGGAAGCAGTAGCCCCGAGGCCGGGCCAGCTCGAGCCCCTCTGCATTTGTGCCCACAG
Seq C2 exon
CTGCACCCGCACCATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCATCTTCCTCCTTGTCTTCCTGCTCGTCTCTGACTACATGAAGAGGAGAAAGCCGAAGGACTTCCCCCCCGGTCCTTTTTCCTTCCCTTTCCTGGGAAATGTGCAGTTTATGTTTGCGAAAGACCCCGTGGTTGCAATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911:ENSGALT00000017750:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(5.8=44.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGAAGGGAAGGGACG
R:
GGAGATGCTGTCCCAGAGGAA
Band lengths:
303-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]