GgaINT0039592 @ galGal3
Intron Retention
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2410317-2412417:+
Coord C1 exon
chr8:2410317-2410370
Coord A exon
chr8:2410371-2412306
Coord C2 exon
chr8:2412307-2412417
Length
1936 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CATCTTATTTATTTAAACAGAGA
3' ss Score
6.53
Exon sequences
Seq C1 exon
CACTTGTATTTCATTACTCCTGATATAACTGGATTGCCAACAATCCCTGAAAGT
Seq A exon
GTAAGTATGCAGTTTCTTTTTAAGAAATTTGGAAGTGTAAGCCTCATTCTTTCAGTTGGACTGTACTCTGCTTTTATCAATAGATGGGTTTTTTCTGTGAAAATTGTTTTTAGAATATGATTGATGTCTATTATCATAACCTTTAGCTAGTGAAGTTACTCTTGCATGCATTGTTAAAGCATTATACAAGGCATTTCTGAGAACTGCTGTCTGTCTTTTGTTCATAATTACTCTGTTTGTTTGCATTTATGGGGGTTTATATATGCAAAACATACTCTACTTACACAGCTAGTATTGTTTGAATACATGCCCTTTAAACACTGCTTTGCTAAGCTGCAGATTTAGCTATCAAGATAGGCAGTTAATTTTTGTGTAAGAAGGCATTGTTTCAGGCTTCGTGAAAACATACTGTACCTGCTTGCGTATGGATGGTAGCCATACACCAGAAACAATTATTGTTACTTTTTAACGAAGGCTTTCGTTCCGTAGAAGCTGAATTCTTGGTAGTGCTGCCGTACGAACGCAAAATGTCAGATCATGTCCTCTATGATGTGTTTAGATAGATAACAACCAATTAAATACCTTCTAACTTTCTGCTTTCTAGTTCTGTGTTAAATCAGGACTTGAACAGGGCTTTATAGGTTAGGATTTTTACACTTTCCCATGACAACTTTCTTCTGAAAGTTTTTGGTGGCTGTGGTGGGCTCACTGCATTACAGACGCCATCCTGGGATGCATCCTGGGAGGAGGGTTAGGGGGAAAGGCAACAGGGCCACACAAGCACAGGCTGAGAAGCCCAAACCTGCAAGGAGCAGGAGGGTATTCCTATCAGGGCTTCAGCCCAGTCCTGAGCTTGTGGCAGGGGACCCAGCGAAGATGCTGGGGCCTTGGGGTGACTCAGAAGTCTGCGAACAGTTGGTGGATTGAGATGAGAGGGCTCAGTACAGGGTGGGACCTTGCTGTCTGTGCTGACTTAGCATGTAGCGTAAGCTGAGTGTCGCTGCTCTGGCTCCTGTCCTTGGGCTGATACTTGCCGATGGTGGGCTCCTGCATTAGTGTTCAGGGGTATGCCATTCCTGAGAGATCAACGGAGCTTCTGGTTGCATGTGTGATAATGAACATGTGAAGTTAGAAAATCAGATATACACTTTGTATGTTGTGAGGTGAATTGGTATATATTTGTACGTATTCCCCAACAGTTAAGAATGTTTGCTGTTTTTCAGTGCATTTTTGCTGGTGGTCTTCTGGCTAATTCAGAACCTGTATTTCTGTGGTACTGTGCCACATAGAAATATTGTTAAGTTCTGCTGGAACACAGAGATCCGCCCACCTGACACACCCCCCCCCCTTTTTTTTCCAGTTTCCCTCACTTTCGTATTATCTGACCTATGAATAACATGTACCGGTGGCTTTAATTTTCATAAATCCCACAGAGGTACATTCACAACCTCCTACCACAGCTGGCTGGTTTTGTGGGTTTTTCTTCCCAACAAGCTGGTTTGCTTTACTTGAAATAGAATAAAATGTGCTCACTTTGAGAGAGCCTGGCAAAACATTGTGGTTTTATTGTAATAACTATGGTAGAACAGTTATTGTGGTGCTGGGGGATCTGTTCCTGGGTTGGAAGTTATAGTTAATAGCATACGTTGGTATTGATATACCACATGTCTTAGTTTTTCAGATTTGGAAAGTAAGCAAATCTAAATTTAGAAGCATAATCAAGTAAGCAAAACAATAACTTGCTCCAAAGCTAGATCATCACTAGCTTTAAAATTCAGTTGATTATTTTTTTTAGATCATATGCATTTTAATGCAGATTTCTTAATAGTTTTTTTTTCCACCGATTAATTGGTCAAATCTTTTGGTATGCAGTGTATTAATGCTCCTCTTTGCTACTGTTGTCACTATATTGTTAACATCTTATTTATTTAAACAG
Seq C2 exon
AGAAACCTCACTGAGTATGTTGTTGCTGTGGATGTGAACAACATGCTGCAACTTTATGCCAGTATGTTGCATGAGAGAAGAATCATTATTACCTCGAGCAAACTAAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246:ENSGALT00000003516:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.4=100)
A:
NA
C2:
PF0214116=DENN=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]