GgaINT0039786 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:2672421-2673305:-
Coord C1 exon
chr8:2673099-2673305
Coord A exon
chr8:2672598-2673098
Coord C2 exon
chr8:2672421-2672597
Length
501 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AGGTTTGCATATCTTTTCAGAAG
3' ss Score
5.82
Exon sequences
Seq C1 exon
AGAAACCCTGTTCGCCACCACAACCTGTAGAACACGCTGATGATGTCAGGCTGGTAAATCAAAGCTTAAAAATGGAAAAAGAAGGCAAAACAGTTTATCTAGCTGGTGCTGTAGTGAAGTTCACTTGTCATTCTGGATTTGAGTTAGACGGACCATCGGAGATAAGTTGTTCTATGGGAAACTGGAGTTCATATCCTACGTGTTCAG
Seq A exon
GTAACATCAAGCAATACTTTTCCTGGAACTGGCTTAGTGGTGAATTTGAAATACTTTTAAACTGGAGTTGATTAGTAACAACGATTTAGTATTTTAAGTATTCCTGTGGTATTTTTGCAATCTTTGTTGAGCGTTTGTCTCTGCCAGATGAGTTGTGGGCATATCTTTATCACCAGAGGACCTGTTTTCTACAGAGTCCACTAGTGACTGTGAGTCACTCTGACACTTCAGCGATGGATATTGCTTCTGTGTAGTAAGGGAAAGAAGCCTTTGCCAAAATTTTCTGGAGCTGATAGAAAAAGGATCAAAATCTTTTCAGTGATTAAAGCGTATGTCTAGTTAGGAGACTAACATGGAAGTTTCTGCGTGCTCTCTTTTATAAAAAATCTGCTGGTAGTTATTGACCGTGCTGGTTAGAAAAAGCATCTGTTTGGTCAGAAAAATAATCTCATTCTGTGCGTATCATATTACCACAAGTATCAGGTTTGCATATCTTTTCAG
Seq C2 exon
AAGCATCATGTGGAAGTATTCCAAATGTTCCCAATTCTGCAATTGAAGGCAGAAACAAGGAAGCGTATGAGCCTGGTGAAACAATTCGCTACCAGTGTGATGAAGGATTCGAGGCTGTTGGTGTCCCGGAAATTATTTGCAGAAAAGGAAATTGGTCGACACCACCGTTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431:ENSGALT00000003831:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.9)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCTGTTCGCCACCA
R:
TAATTTCCGGGACACCAACAGC
Band lengths:
342-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]