GgaINT0039931 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:22596207-22598111:+
Coord C1 exon
chr8:22596207-22596334
Coord A exon
chr8:22596335-22597986
Coord C2 exon
chr8:22597987-22598111
Length
1652 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
TTTTCTCCTTTGCCCACTAGGAT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GGAATGGCTTGCTGATCCTGCATGGGCCCAAATGGCACCAACATCGGAAGCTCCTGACACCAGGCTTTCATTACGACGTCTTGAAGCCTTATGTAGCCCTCATGGCAGAGTCTACCAATGTGATGCTG
Seq A exon
GTAGGGACAGTGTCTGTACCTCTCTCTGTCCTATGTTATCACCCATGATTCTGATTGTAACCATGAGATAAGAGTCTTCCTGCAGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCCAGTCTCTGGCCCAAAGAAACCCATGCAGAGCTGAGAATCAGGCATCCCCTTGGGAGCCCCATGCATGTGTTATCCCCTTGCCCAAACTGTGATCATGCAGACCAAGGGAGCTGTGGTGAGCAAAGAAGTTTGTGGAAAAGGATGTGCTATTGCAACAACAGCCACATGCACATCACTTATTGTCACGCTCCTGAAAAAGTAGAACTACCTGCATGAAGAAATACACGTCAGTGCATTGGGAGCAGGGAGGAAGCCACCTCTTTGTCCAGCTTTGTGTTCAGGAGGTGATTTCCAGGTTCAGCATCTGCTGCCCTGCTGAGTCTTCAGCTCTTATTTACTCAGACAAAGTGATCCAGGAGCGAAAGGAGTCCCTTAAAGATGAACGGGAGTTTGAGAAGATCAAGAAGAAGAGGCATTTGGACTTCCTGGACATTTTACTCTGTGCTAAGGTGAGCAGTGAGGTGCATGGCTCATCACATCTGAGGAGGGCACATGCCATAGGGAGCAAAATTCAGTCCCTGTGGCAGTGCCACAAACTCACAGACATCCCCAGGGGATATTGTTTTACATTAGCTGCAGGCATCGTGCCCAGTCCTATCCAAATGAGGAAGAATGGGGATGTCCCAGTGTTCAACCACTGAGATGCTGGCAGTGTCTGGGATGACAACCTGGAAAGGGATTTCATAGTCTTAATATCATGGGGAAAAAGGGGTTTACAGGCAAAAAAAAAAAAAAAAGCATCCCTAAATTCAGTCTCTGCAGAGATTTATCCAAGGCCATCATCACCTCTCTTTGCAATGTTCCTTCCTGGGTTAAATGGGACCACTGAAGCTGTCTCTGTGTTGCTAGGATGAGACCGGAGCTGGCCTGTCTGATGAGGACCTGCGTGCTGAAGTGGACACGTTCATGTTTGAGGGGCATGACACCACAGCCAGTGGGCTCTCATGGGTCCTGTACTGCCTGGCGTCACACCCCGAGCACCAGGCACGGTGCAGGGAGGAGATCNNNNNNNNNNCTCTTCCCTTTCTTAGCTTTTGGGTCACCGGTTCCTTATGGTCCCAGAAGGAAAGAAGATCCAAAGTAATTTTGCAGTATTTATGGTTTCTCTTAGGATACCCTATGGGAAACATTGAGCAAGAGTTCCTATATTTTATGCTGAAAAAACACAGTGGGACAGAAATCATGAGATGCGGGAAAAGCCTTGATTGGGAGCTTGCATCCTAGGCACTACAGTCATATATTCTGGAGAGATAAAGAAAAAAGAGACTGGGGGAAGCCTGGTGCCAGCACACATTGCTCTGGCTGCTGGTTCCCTTCTCCGGAGTTTTGACAGCAACTAAGAGATCCTCTTCACTTCTCCATTCCTTCAGGACACATCCCATACTAAGCACTTCCTTAATGGGAGGGTGAGTGCAGAACTGTCTTTTGCATTCTCTTTTTTCTCCTTTGCCCACTAG
Seq C2 exon
GATAAGTGGGAAAAGCTGATCACAAATGGGAAATCGGTGGAGCTCTTTGAGCACGTCAGCTTGATGACTCTCGACAGCATCATGAAATGTGCCTTCAGCTACCACAGCAACTGCCAGACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(23.5=100)
A:
NA
C2:
PF0006717=p450=FE(22.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCTTGCTGATCCTGCA
R:
GTCTGGCAGTTGCTGTGGTAG
Band lengths:
246-1898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]