GgaINT0039978 @ galGal3
Intron Retention
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1070582-1072894:-
Coord C1 exon
chr8:1072826-1072894
Coord A exon
chr8:1070669-1072825
Coord C2 exon
chr8:1070582-1070668
Length
2157 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTTCTGGTTGATGCTCTAGGAC
3' ss Score
8
Exon sequences
Seq C1 exon
GAGCTGGTAAAGCACACTACAGATCCCATGGAGAAAGCAAATCTAAAACTGGCACTTGATGCAATGAAG
Seq A exon
GTAAGTCATGCCGATCAAGAATTTATACCCATGTTGGCATTCAAAACGGTAGTTAATAACTAGATTTCCTGGAAAATATAGTGTTCTTCACAACAGATGAAATAGATGTTTGCTCAAGTCATTGTGTACTTTGTGAGTACGTGGTTGAAGGCTTTCTCCAAGTTTTGGAACAAATTTAGTAATTTTCTGAAGGGAGCATATCTGAAATGGAGCTTCTTCATTTCAATTTACTTTTTAAATCACTTTGCTGTCATGTACTGAGGTAAGCAGCAGGTGTTTCAATAACTTTGTTCTTAGTTCGGAAATGTAGGACTATTTCTGTAACTGTAAACCAATTCTAATCAAGGTGGGTGGTTTCCTGATGAGATGAAGATGTTTTTTTTAGAAGACTGTTTTTCTATGATCTCTGCCGCTTTACCCTTGAAATTAGTGGTATCTTTCGTTAGGTACAGTACCTGGCAGTGTACATTCACCTGCAAGTGGCACAAACACATGCTTTATAGAAGAGCAGTACTGCCTTAATATTACTTTGTGTTCTTCTCTACAGTGAAATATTTGCTTCCATTGGCTTTGCTACATGAATTGTGAAATTCATGTGGTGGAATTGAGTTTTCTTCTGTCCTGCGGTGGGGGGAACCAACACAGTATAGGTCCTAACTCCCTCTATTGCAGGCTGTATTTTTCACAGGAGATGCACAAGTTAGAATAAGTAAGTTTTCAGTCATGCAGCTGCCTATACTGCTACTTGAATTCCTAGAGTGCAGCCTAGCTTCATTATTTCTGGTGATGGCTGGTCTCAAAATAAGACCAATTAAGAAAACTTTTGTCAGAATGATTGTGGCAGTTGTGTTCTGTCAGCCACCCAATAATAATAAAAAATAATTCTGCGGGAACTGGCATCTCTCACTAAGGTCACAACATCGTTTTCCTCCCAATTATACTGTATCCTTTCGTACTGAGCCCTGTCAGAGCAGTAGAAGTAGCAGTGCAACATAATTTGTTGCTTCTAAAGGCTTTTGTTTGTCTGCTTGAAAACGATATTTGGAAAAAAACTGAAAAGATGGTACTGCTCCCTGGAAAGAGAATGTGGCAAAGAAATCTGACTGTGAGATTTCTTTTAGCAACAACCGAGGGGTTATTTAATTTCTACACCAACTCTTGTAAGACTGATGTGAATGTATCCTGCTTGCATTCCTTTGGGAAACTGGTGTGATAATTGCAGCTATTCTTAGATTCTGATTAAAATTTTATTAGAAAAAATATGTATGCTTTTCCCACCCTCCTAAATTTGTAGCCATATTGAAGGATACTGTAAAAGCAAGTTGTGAAGATCAGAATACCTTTTCTAACGGCTGCTCTCAGCGTCCCTGACCTCACCAATTACTACTGCTGCTTCCTCCTTATCTCTAGCCATAAACAGAGAAGCCCCAGCAAACTGTCACTATTACTCAAGTGTATTTAAAGCTGTTTAAAGGCTTTAGTGAAATGTGTATGTTATGTACTCTGGTAAGGGAGACAATAATGATCTCAACCTGTGACTTCAAGCAGTATATCGCCTTAAGGACTCCTTTAAAATCTATGTAATATCTTCTCTCTGCTGTACAACACTACTACTCTGTAGTAGCTTTTTATGTCCCTCTTAATATGCATTCCTTAATATAAATTAAATCCTTACTTTTGAGGAGCATTATGTTTGGTTTTCTATTACATTATATTTTTTACCTATCCTATTATCTGATTTTGAATGTTGACTGCTTTTTTTAGGCCACAGCTGTACTGCATTTATTACGTTTCCATCTTCAGTTTTTGGAATATGACATTAATAAAACTGAAAAAAACTCATCCCTTTTAAAGGAAAAAAAATCAACAAAAACAAAACAGTACATTGTCCTTTCTTGCTACAGGATTTGGATTTGAACAGATACAATGAAGAAAGCTGTATATTTGATTTAAGATTTGCAGAGGCTTTTTTTGTGTATTTAGGCAGACAGATTGGTAATTCACTACCATCAAGTATGTATGTGTTTGAATATATGTATGTCTTTATTTAAATAAATGTGAAGATAAGCCTAGGACAGAACTAGAAATAAATTTGCTGAAATAATGTATTGAAGTGGTCTGTTTTGGACTTGATCCCTTTTCTGGTTGATGCTCTAG
Seq C2 exon
GACTTGGCTCAGTATGTAAATGAAGTGAAGAGAGATAATGAAACACTCCGTGAAATTAGACAATTTCAACTATCAATAGAGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915:ENSGALT00000002946:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.6=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(4.0=24.1),PF0063014=Filamin=PU(5.7=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]