GgaINT0041476 @ galGal3
Intron Retention
Gene
ENSGALG00000017378 | CRTAC1
Description
NA
Coordinates
chr6:23709406-23709858:+
Coord C1 exon
chr6:23709406-23709549
Coord A exon
chr6:23709550-23709745
Coord C2 exon
chr6:23709746-23709858
Length
196 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTTCTTGTTCTCCATGCAGCTC
3' ss Score
10.75
Exon sequences
Seq C1 exon
ACACCAACGAGTGTGCTGAGTTCCCCTTTGTCTGCCCCCGGGAGAAGCCCATCTGCATCAACACCTATGGCGGGTACCGCTGCCGCAGCAACAAGCGCTGCGCCCGTGGCTTCGAGCCCAATGAGGATGGCACAGCATGTGTGG
Seq A exon
GTGAGTGATGGTGGGGATACACTGGAGCAGCACCTTGGGATGGTGATGTACCCATCCAGGAACAGTCACCCTTGCACCCTCCAGCGGTTGCCTATACCCCAGCCCCACAGCCACCTGCCTCCATTCCTGCTGGTCCACTTGCTGCTGACCACCCAACTCTCTTTCTTTCCCGCTCCTTTTCTTGTTCTCCATGCAG
Seq C2 exon
CTCAGGTGGCCTTTTTTGGGGGATACCCCTCCACCGGGAGCTGGCCTTGGGCCCCCCAAGGTGTTCTCCTCTCTCTGGGCTTCGGACTCTGCCTTTGCCTCTATGCACTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378:ENSGALT00000028063:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACGAGTGTGCTGAGTT
R:
AGTGCATAGAGGCAAAGGCAG
Band lengths:
252-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]