GgaINT0041676 @ galGal4
Intron Retention
Gene
ENSGALG00000006626 | PDE6C
Description
cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' [Source:RefSeq peptide;Acc:NP_990317]
Coordinates
chr6:19918366-19918655:-
Coord C1 exon
chr6:19918512-19918655
Coord A exon
chr6:19918435-19918511
Coord C2 exon
chr6:19918366-19918434
Length
77 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTGTTCATTTTCATTTTCAGAAA
3' ss Score
11.62
Exon sequences
Seq C1 exon
ACTCTTACACAGTTCCTGGGGTGGTCTGTTTTAAATACTGACACTTATGATAAAATGAATAAGCTTGAAAATAGAAAAGACATTGCTCAGGAAATGCTTATGTATCAGACAAAGGCTACTCCTACTGAAGTTGAATCTATACTG
Seq A exon
GTGAGTTTCTGTCCACAAAATTAAAGTAGTAAATTTGCTACAGAAAACCTAAATGTACTGTTCATTTTCATTTTCAG
Seq C2 exon
AAATACAAAGAGAAATTAAACGTAAAGAGTATAGAAGAATGTGATGAAAAAGATCTTATCAGGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006626:ENSGALT00000010702:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]