GgaINT0041684 @ galGal3
Intron Retention
Gene
ENSGALG00000006626 | PDE6C
Description
NA
Coordinates
chr6:21458729-21460186:-
Coord C1 exon
chr6:21460123-21460186
Coord A exon
chr6:21458804-21460122
Coord C2 exon
chr6:21458729-21458803
Length
1319 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTTTGAATTATATTTTTCAGGTT
3' ss Score
9.32
Exon sequences
Seq C1 exon
GGCTATGATGATGACCGGATGCGACTTGTCTGCTATAACCAAGCCTTGGGAGGTGCAAAGCAAG
Seq A exon
GTAAGTACTTTTCAAACAGATAATCCTGTATTTAATCCTTCCCACTTGTGCCTGATGTCATGAAAAAACAAACAAACAAAAAAACCCACATTACTTATTATAATTTGTTAGGCATATAACTATTTGCACCCAAGTGCCTTTCTCAAAATCAACCTCCCTGTTTCTGTCACTAAGAGTACAAGGGCTATCTCCCCTTTTCTACTTGTCAGTCAGCTAAAACTGCCCTCCCCAAATCTGTCAGCTGTTCTAGCTACTGTTAAATGTTACTATACTATATTAGTGTAATCCAACTTTTGCTATTTTTCAGGTATTTCTAAGGTACAGATGTCACAACAGAAAAGATTAAATTAAATGTGCCTATTCTGTAGATCTTGGTGCTGCTTCAAAGTAGTTTAATCATGCTAAGAATAAATTCAGTAATACGTGACAGTGCCTTGCAGTTAAATACTTCAAATACTTCAGTACTTACTGACCATCACGCTCAAACTCATCCATTAATTTTACAGGTATAGGTTTTAGAAATGCATAATCAAAACACAAGATGGTTGTGGAGTAATTTCTAAGGAGGAAATTTTTTACTCAGAGGGTGGTGAGTTACTGGAACAGACTGCCTAGCAAAGCTGTGGATGCCACATCAATGTTAAAGGCCAGGTTGGATGGGGCCCTGGGCAGCCTGATCTAGTGGGTGGCAACCCGGCCAGTGGCAGGGGGTTTGGAATTGGATGGGCTTTAAGGTCCCTTCCAACCCAAGCCATTCAATGATTCTAAGATTTTATGAATCACAGGAACTAATAGATTCTGTTGTGTTGCTAATATTGTCATGGTACTGCTAATGATAATCATAAAAACATAGAATCATAGATTGACTTGGGTTTGTCCCTTAGAGATCATCTAATTTCAACTCCCAAATCTATCTTTTAGATAGTGTGCACCAGCATGTAAAAATGGAAGATAATTATTTGCTGGAGAAAGCCTTAAATACACCAGAAAGCGTTTACAATTCCTGAGAAGTGCTCAACTCTCAATAAGGATTAAATGGTAGAATTCTATTGTCTTTGACTAAAACTCCCTATTTCTGGAGAACTTTTTAAGCTACTCAGAAATAACACAGCTAGTAAGAAATAAATCCTCTTTTGTGGATGTGAAGTTAGTAATAACAGTTAAGTGGTAAATCGAAAATATGTTTATTTAAACAGTAACCTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGGAAAGCCTTGTTCTTACCTTTCTTCATTTATTTATTCATTCAGATCTACTGTTTATGGCTTACATTTCCTTTGAATTATATTTTTCAG
Seq C2 exon
GTTGCCCTCATGGTTGCAAATGAATTTTGGGAGCAAGGTGACCTGGAACGAACGGTACTACAGCAACAACCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006626:ENSGALT00000010702:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.4=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]