GgaINT0042398 @ galGal4
Intron Retention
Gene
ENSGALG00000009681 | BUB3
Description
mitotic checkpoint protein BUB3 [Source:RefSeq peptide;Acc:NP_001006506]
Coordinates
chr6:31024080-31024522:+
Coord C1 exon
chr6:31024080-31024174
Coord A exon
chr6:31024175-31024413
Coord C2 exon
chr6:31024414-31024522
Length
239 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTGCCTTCCTCCCGCCCAGACA
3' ss Score
8.14
Exon sequences
Seq C1 exon
CGACCAATGGGAGAGCGGCGCGAAGCGGAGGGGCGGGGTTGTGCGTACTGTGCCTGCGCGGAGCGGGCGGCCGTTGCGCGCTGTGAGGCGGTGAG
Seq A exon
GTGAGGCCGCGGCGGGCGGAGGGGTGAGGTCGGTTCGGGTCTGGTGGGGTCGGGAGCGGGGCTTTGTGGGTTGGGAGAAGGGTGCAGGGATAGCGGTGGAGCCTCCGGGTTCGCTCCCGGCTCGGGGCTGCGCTGAGGGGCGGCAGCGGGCGTTGCGGCCTGCGAGCGGCCTCCCCTCAACCGCCGCTTCGGGCTGCGCTCCGGGCCTCGCCTTCACTCTGTGCCTTCCTCCCGCCCAG
Seq C2 exon
ACAGGACTCTCCGGGACCGGGCTGCCTTCCTCCCCCGCGCTGCTGCGTGAAGAACGTTTCTCCTTGGTGTGGCCTCGAGAGAGGGAAGAAGCCGTGTACTATGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009681:ENSGALT00000015757:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCAATGGGAGAGCGG
R:
CGTTTTCATAGTACACGGCTTCT
Band lengths:
204-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]