GgaINT0042930 @ galGal3
Intron Retention
Gene
ENSGALG00000005469 | E1BUU0_CHICK
Description
NA
Coordinates
chr6:17650090-17650815:+
Coord C1 exon
chr6:17650090-17650240
Coord A exon
chr6:17650241-17650654
Coord C2 exon
chr6:17650655-17650815
Length
414 bp
Sequences
Splice sites
5' ss Seq
AGAGTACGA
5' ss Score
2.43
3' ss Seq
TAACTTTGCTGATCTCACAGGAC
3' ss Score
7.03
Exon sequences
Seq C1 exon
NGCATTATTTTCAGCAACAACGAGGGATGGTTACACGTTCGGCGGTTTGCTCTCAGCACTCTGCGCAACTTTGGGATGGGGAAGAGGAGCATTGAAGAGAGGATCCAGGAGGAAGCTGAGCACTTGCTTGAAGAGATCACAAAAACAAAGA
Seq A exon
GTACGATCCACTGCTAATACAGCCTACATCTGCAAAAAAGGAACGTGCCAAGGGAGCCCACGTTCTTAGCAGAAGCTAGGGAGTCTCCATTCTTGGAGATACTCAAAAGATGTCTGCACGTGCTCCTGCGGCAGCGGCTCCCGGTGCCCCTGCTTGAACAGTGGGCAAGGTGGTCTCTCAGAAGTCTCTGAGCCCTTCTGTGAGTCTGTTAACGCACCCTACGGTGCATTTCACCCCTGAAAGCTGTTAGCAATGCCATGATTGTGTTCTGTTCTTATGGAGAACCCCTCTGTTTTCATTCAGAGACTGTGAAGTTCCAGTGTCTGCTGCAGCTCATGTTACCCAGAGTAGCCATAGGTCTCATTTAATTCATTCTTTGCTTATTTGTACACTGTAACTTTGCTGATCTCACAG
Seq C2 exon
GACTGCCCTTTGACCCAACATTCAAGCTGAGCTGCGCTGTCTCCAACGTCATATGCTCCATTGTCTTTGGGAAGCGATATGACTATAAAGACAAGAAGTTCCTGTCCCTGATGAACAACATGAACAACATGTTTGAGATGATGAACTCCCGCTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005469:ENSGALT00000040273:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(17.1=100)
A:
NA
C2:
PF0006717=p450=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTTTCAGCAACAACGAGGGA
R:
CCAGCGGGAGTTCATCATCTC
Band lengths:
302-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]