GgaINT0044285 @ galGal4
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21797341-21797691:+
Coord C1 exon
chr6:21797341-21797495
Coord A exon
chr6:21797496-21797584
Coord C2 exon
chr6:21797585-21797691
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ATGTCTCCATTCCTCCATAGTGT
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCCCATGATTGAGCTGTGCATCCCCTCCGCGCTGGACCCGGGGCTGGCCCCTCCAGGCTGCCACGTTGTGTCCCTCTTTACCCAGTACACTCCGTATGAGCTGGCAGGTGGGCAGCCCTGGGACGAGAAGGCTCGGAATGCTTATGCAGACACAG
Seq A exon
GTGTGTAAAGCATGCGTGGAGCAGGATAGTACCTGGAGCACCGGTCCCTGCTTATGGGAAGAGCCAGCAATGTCTCCATTCCTCCATAG
Seq C2 exon
TGTTCGACTGCATTGAAGCCTATGCCCCAGGCTTCAAGGTGTCTGTCATCGGCAGGGACATCCTGACACCACCTGACCTGGAGAGGATCTTTGGACTGCCCGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGAGCTGTGCATCCCCTC
R:
GGGCATAGGCTTCAATGCAGT
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]