GgaINT0044465 @ galGal4
Intron Retention
Gene
ENSGALG00000008905 | HABP2
Description
hyaluronan-binding protein 2 preproprotein [Source:RefSeq peptide;Acc:NP_001264308]
Coordinates
chr6:26985369-26985767:+
Coord C1 exon
chr6:26985369-26985463
Coord A exon
chr6:26985464-26985547
Coord C2 exon
chr6:26985548-26985767
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TGCTATTTCTTCCAACACAGATG
3' ss Score
7.53
Exon sequences
Seq C1 exon
AAATCCTGATGAGGATCAAAAGCCCTGGTGTTTCATTAGAAACAATGGCAAAGTGCAATGGGACTTCTGTGATGTTTCACCATGCTCTGGAACAG
Seq A exon
GTAGAGTAATCGATTAGGAGTGAGCTGGTTGGCCATGCATAGGTAGGATTTCTGCAGTACGTGTTGCTATTTCTTCCAACACAG
Seq C2 exon
ATGAGGAGAGACAAGAGCAAGAAGATGAAATGTTCAAAACCTGTGGACAACCAGAAAGTCAAAGGGGACTCAGGAGAATCTATGGTGGAACTAAGACTACAGCTGGCAAGCACCCCTGGATGGTATCTCTGCAGAGAAAGTCTTCTAGAAGAGTAACACACTTCTGTGGTGGAGCGCTAATTAAATCATGCTGGGTTCTTACTGCTGCACACTGTGTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905:ENSGALT00000033102:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.243
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=84.8)
A:
NA
C2:
PF0008921=Trypsin=PU(19.9=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAATGGGACTTCTGTGA
R:
TGCAGAGATACCATCCAGGGG
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]